miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
845 5' -59.8 NC_000898.1 + 87035 0.67 0.673434
Target:  5'- cGCGGcGCCUUUcuccucgaucguaGGUAGAGUCUCCAu -3'
miRNA:   3'- uCGUCuCGGAGG-------------UCGUCUCGGAGGUc -5'
845 5' -59.8 NC_000898.1 + 129123 0.71 0.422329
Target:  5'- nGCAGGGCUUCCAGCAaAGCUUCn-- -3'
miRNA:   3'- uCGUCUCGGAGGUCGUcUCGGAGguc -5'
845 5' -59.8 NC_000898.1 + 129194 0.77 0.175416
Target:  5'- nGCAGGGCCUCCAG-AGGGCCUCn-- -3'
miRNA:   3'- uCGUCUCGGAGGUCgUCUCGGAGguc -5'
845 5' -59.8 NC_000898.1 + 129578 0.86 0.0463
Target:  5'- nGCAGGGCCUCCAGCAGAGUCUCn-- -3'
miRNA:   3'- uCGUCUCGGAGGUCGUCUCGGAGguc -5'
845 5' -59.8 NC_000898.1 + 129242 0.87 0.036331
Target:  5'- nGCAGAGCCUCCAGCAGAGCUUCn-- -3'
miRNA:   3'- uCGUCUCGGAGGUCGUCUCGGAGguc -5'
845 5' -59.8 NC_000898.1 + 129374 0.92 0.016524
Target:  5'- nGCAGAGCUUCCAGCAGAGUCUCUAGc -3'
miRNA:   3'- uCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129458 0.92 0.016524
Target:  5'- nGCAGAGCUUCCAGCAGAGUCUCUAGc -3'
miRNA:   3'- uCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129603 1.01 0.004087
Target:  5'- cAGCAGGGCCUCCAGCAGAGCCUUCAGc -3'
miRNA:   3'- -UCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129147 1.01 0.003976
Target:  5'- nGCAGGGCCUCCAGCAGGGCCUCCGGc -3'
miRNA:   3'- uCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129398 1.02 0.003281
Target:  5'- nGCAGGGCCUCCAGCAGGGCCUCCAGc -3'
miRNA:   3'- uCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129483 1.03 0.00286
Target:  5'- cGGCAGGGCCUCCGGCAGGGCCUCCAGc -3'
miRNA:   3'- -UCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129172 1.04 0.002359
Target:  5'- cAGCAGGGCCUCCAGCAGGGCCUCCAGc -3'
miRNA:   3'- -UCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129519 1.04 0.002359
Target:  5'- cAGCAGGGCCUCCAGCAGGGCCUCCAGc -3'
miRNA:   3'- -UCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129423 1.04 0.002359
Target:  5'- cAGCAGGGCCUCCAGCAGGGCCUCCAGc -3'
miRNA:   3'- -UCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129303 1.04 0.002359
Target:  5'- cAGCAGGGCCUCCAGCAGGGCCUCCAGc -3'
miRNA:   3'- -UCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129100 1.05 0.002114
Target:  5'- cAGCAGGGCCUCCAGCAGAGCCUCCGGu -3'
miRNA:   3'- -UCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129638 1.05 0.002001
Target:  5'- nGCAGAGCCUCCAGCAGAGCCUCCAGc -3'
miRNA:   3'- uCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129219 1.06 0.001842
Target:  5'- cAGCAGAGCCUCCAGCAGGGCCUCCAGc -3'
miRNA:   3'- -UCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129267 1.07 0.001438
Target:  5'- cAGCAGAGCCUCCAGCAGAGCCUCCAGc -3'
miRNA:   3'- -UCGUCUCGGAGGUCGUCUCGGAGGUC- -5'
845 5' -59.8 NC_000898.1 + 129339 1.07 0.001438
Target:  5'- cAGCAGAGCCUCCAGCAGAGCCUCCAGc -3'
miRNA:   3'- -UCGUCUCGGAGGUCGUCUCGGAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.