miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8450 3' -55.2 NC_002167.1 + 4848 0.66 0.624077
Target:  5'- ---cGUCCUgaaCCcgCGCGACUGgCACAa -3'
miRNA:   3'- cgacCAGGA---GGuaGCGUUGACgGUGU- -5'
8450 3' -55.2 NC_002167.1 + 37692 0.66 0.578824
Target:  5'- gGCUGGUUUga---CGCGACUGCgGCAg -3'
miRNA:   3'- -CGACCAGGagguaGCGUUGACGgUGU- -5'
8450 3' -55.2 NC_002167.1 + 33980 0.67 0.545341
Target:  5'- aCUGGaaaaCCAgcUCGCAAUUGCCGCAc -3'
miRNA:   3'- cGACCaggaGGU--AGCGUUGACGGUGU- -5'
8450 3' -55.2 NC_002167.1 + 34033 0.71 0.337774
Target:  5'- aGCUGGUUUUCCAgUUGCAuuuuCUGCUcaGCAa -3'
miRNA:   3'- -CGACCAGGAGGU-AGCGUu---GACGG--UGU- -5'
8450 3' -55.2 NC_002167.1 + 2733 1.1 0.000507
Target:  5'- uGCUGGUCCUCCAUCGCAACUGCCACAc -3'
miRNA:   3'- -CGACCAGGAGGUAGCGUUGACGGUGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.