miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8450 5' -47.5 NC_002167.1 + 7947 0.66 0.93953
Target:  5'- --gACAGGCAAAgcccgguuGGCGAUauucGcGGUGAUAu -3'
miRNA:   3'- aaaUGUCCGUUU--------UCGUUA----C-CCACUGU- -5'
8450 5' -47.5 NC_002167.1 + 11061 0.68 0.857069
Target:  5'- --gACGGGaugaAGcAGGCAAUGGGUGGg- -3'
miRNA:   3'- aaaUGUCCg---UU-UUCGUUACCCACUgu -5'
8450 5' -47.5 NC_002167.1 + 16791 0.71 0.704984
Target:  5'- --cACAGGCcGAAGCuguuUGGGUGGu- -3'
miRNA:   3'- aaaUGUCCGuUUUCGuu--ACCCACUgu -5'
8450 5' -47.5 NC_002167.1 + 2699 1.08 0.003844
Target:  5'- aUUUACAGGCAAAAGCAAUGGGUGACAg -3'
miRNA:   3'- -AAAUGUCCGUUUUCGUUACCCACUGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.