miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8456 5' -54.1 NC_002167.1 + 16370 0.66 0.678599
Target:  5'- gGCUUUUCgugGUGCUGCUcgaauaggugaaGCGaCCGcCAACa -3'
miRNA:   3'- -CGAAAAGa--CGCGGUGG------------UGC-GGC-GUUG- -5'
8456 5' -54.1 NC_002167.1 + 17097 0.66 0.644329
Target:  5'- -------aGCGCaAUgGCGCCGCAACg -3'
miRNA:   3'- cgaaaagaCGCGgUGgUGCGGCGUUG- -5'
8456 5' -54.1 NC_002167.1 + 35632 0.66 0.632866
Target:  5'- -------aGCGCCGCauauCGCGCUGUAACg -3'
miRNA:   3'- cgaaaagaCGCGGUG----GUGCGGCGUUG- -5'
8456 5' -54.1 NC_002167.1 + 23064 0.67 0.609949
Target:  5'- cGCac-UCUcCGCUACCAgCGCCGCGcACu -3'
miRNA:   3'- -CGaaaAGAcGCGGUGGU-GCGGCGU-UG- -5'
8456 5' -54.1 NC_002167.1 + 15782 0.68 0.564443
Target:  5'- -----aCUGCGCuacccgaaCACCGCGCUGCucuACg -3'
miRNA:   3'- cgaaaaGACGCG--------GUGGUGCGGCGu--UG- -5'
8456 5' -54.1 NC_002167.1 + 4563 0.68 0.553192
Target:  5'- uGC-UUUCUcUGCCACCACGUCgGCGu- -3'
miRNA:   3'- -CGaAAAGAcGCGGUGGUGCGG-CGUug -5'
8456 5' -54.1 NC_002167.1 + 35551 0.69 0.466259
Target:  5'- ----aUCuUGCGCC-CgGCGUCGCGGCa -3'
miRNA:   3'- cgaaaAG-ACGCGGuGgUGCGGCGUUG- -5'
8456 5' -54.1 NC_002167.1 + 1601 0.72 0.325236
Target:  5'- gGCUg--CUGCG-CACCACGCCaGgAGCu -3'
miRNA:   3'- -CGAaaaGACGCgGUGGUGCGG-CgUUG- -5'
8456 5' -54.1 NC_002167.1 + 5752 0.73 0.301121
Target:  5'- cGUUgc-CUGCGCCGuuuCCGCGCCGCc-- -3'
miRNA:   3'- -CGAaaaGACGCGGU---GGUGCGGCGuug -5'
8456 5' -54.1 NC_002167.1 + 32215 0.74 0.230752
Target:  5'- -----aCUGCGCUaACCACGCCGCugugGCg -3'
miRNA:   3'- cgaaaaGACGCGG-UGGUGCGGCGu---UG- -5'
8456 5' -54.1 NC_002167.1 + 12915 1.12 0.000441
Target:  5'- gGCUUUUCUGCGCCACCACGCCGCAACa -3'
miRNA:   3'- -CGAAAAGACGCGGUGGUGCGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.