miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8457 3' -55.6 NC_002167.1 + 11235 0.66 0.628632
Target:  5'- gGCGCAucuuCcGcCGCUgccgCCAGUAGCGGUa -3'
miRNA:   3'- -CGUGUuu--GcCuGCGA----GGUCGUCGCCG- -5'
8457 3' -55.6 NC_002167.1 + 39097 0.66 0.628632
Target:  5'- uGUGCGAGCagcagGGGCGCauaacaCCAGCAaCGGUg -3'
miRNA:   3'- -CGUGUUUG-----CCUGCGa-----GGUCGUcGCCG- -5'
8457 3' -55.6 NC_002167.1 + 37640 0.66 0.606162
Target:  5'- uCGCAGACauGGACaGC-CCAagAGCGGCa -3'
miRNA:   3'- cGUGUUUG--CCUG-CGaGGUcgUCGCCG- -5'
8457 3' -55.6 NC_002167.1 + 20850 0.67 0.528727
Target:  5'- uGCGCcagauauuGAAUGGccuACGcCUCCGGCAGUucaGGCc -3'
miRNA:   3'- -CGUG--------UUUGCC---UGC-GAGGUCGUCG---CCG- -5'
8457 3' -55.6 NC_002167.1 + 15571 0.67 0.507224
Target:  5'- -uGCAGACGGACgGCggcacaUGGCAGaCGGUa -3'
miRNA:   3'- cgUGUUUGCCUG-CGag----GUCGUC-GCCG- -5'
8457 3' -55.6 NC_002167.1 + 24029 0.67 0.507224
Target:  5'- aGCGCAAGCGGAuuacuaccguagUGUUCUuGUugaaGGUGGCa -3'
miRNA:   3'- -CGUGUUUGCCU------------GCGAGGuCG----UCGCCG- -5'
8457 3' -55.6 NC_002167.1 + 19274 0.68 0.496613
Target:  5'- gGUACAAACuGGACaGCUCCcGcCAGCcaGGUc -3'
miRNA:   3'- -CGUGUUUG-CCUG-CGAGGuC-GUCG--CCG- -5'
8457 3' -55.6 NC_002167.1 + 9556 0.68 0.493449
Target:  5'- -aGCAAGCuGGuaagcuCGCUCagcagcaauagcauCGGCGGCGGCc -3'
miRNA:   3'- cgUGUUUG-CCu-----GCGAG--------------GUCGUCGCCG- -5'
8457 3' -55.6 NC_002167.1 + 18067 0.68 0.455232
Target:  5'- -uGCAGACGGACGUcaaCGGCAacaaGGCa -3'
miRNA:   3'- cgUGUUUGCCUGCGag-GUCGUcg--CCG- -5'
8457 3' -55.6 NC_002167.1 + 10869 0.69 0.444181
Target:  5'- gGCugGugaaaucGACGaGACGUUCuauCAGCAGgGGCu -3'
miRNA:   3'- -CGugU-------UUGC-CUGCGAG---GUCGUCgCCG- -5'
8457 3' -55.6 NC_002167.1 + 38329 0.69 0.406256
Target:  5'- aGgGCAGAUGaaauUGCUCUAuGCGGCGGCc -3'
miRNA:   3'- -CgUGUUUGCcu--GCGAGGU-CGUCGCCG- -5'
8457 3' -55.6 NC_002167.1 + 6274 0.75 0.168384
Target:  5'- cGCACAAACGGAUGUgcaGGCAuguucGCGGUa -3'
miRNA:   3'- -CGUGUUUGCCUGCGaggUCGU-----CGCCG- -5'
8457 3' -55.6 NC_002167.1 + 14862 0.77 0.135981
Target:  5'- cGCGCuGGCGGAaaGCUCCAGCaucaccagacucgacAGUGGCg -3'
miRNA:   3'- -CGUGuUUGCCUg-CGAGGUCG---------------UCGCCG- -5'
8457 3' -55.6 NC_002167.1 + 13189 1.14 0.000243
Target:  5'- aGCACAAACGGACGCUCCAGCAGCGGCa -3'
miRNA:   3'- -CGUGUUUGCCUGCGAGGUCGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.