miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8458 5' -53.8 NC_002167.1 + 15642 0.66 0.695572
Target:  5'- gAGCGcAGCCaCCGuaUCGAUUUACC-GCAGg -3'
miRNA:   3'- -UCGU-UUGG-GGC--AGUUAGGUGGuCGUC- -5'
8458 5' -53.8 NC_002167.1 + 12540 0.66 0.661402
Target:  5'- cGGCAAGCucgccaguuuuCCCGUCGAUauaccagaCCugCAGCu- -3'
miRNA:   3'- -UCGUUUG-----------GGGCAGUUA--------GGugGUCGuc -5'
8458 5' -53.8 NC_002167.1 + 1823 0.67 0.626963
Target:  5'- --aAAGCCCUGgccgAAUCgACCAGCGGg -3'
miRNA:   3'- ucgUUUGGGGCag--UUAGgUGGUCGUC- -5'
8458 5' -53.8 NC_002167.1 + 1777 0.67 0.604009
Target:  5'- cGGCAuccuUCCUgaacugGUCAAUgCGCCAGCGGu -3'
miRNA:   3'- -UCGUuu--GGGG------CAGUUAgGUGGUCGUC- -5'
8458 5' -53.8 NC_002167.1 + 30857 0.69 0.514001
Target:  5'- gAGCAuuUCaCGUCAAUCCugaugACCAGCAa -3'
miRNA:   3'- -UCGUuuGGgGCAGUUAGG-----UGGUCGUc -5'
8458 5' -53.8 NC_002167.1 + 38066 0.69 0.47102
Target:  5'- gGGCu-GCCCCGUC-AUCgGCCAGg-- -3'
miRNA:   3'- -UCGuuUGGGGCAGuUAGgUGGUCguc -5'
8458 5' -53.8 NC_002167.1 + 14243 1.08 0.00096
Target:  5'- cAGCAAACCCCGUCAAUCCACCAGCAGc -3'
miRNA:   3'- -UCGUUUGGGGCAGUUAGGUGGUCGUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.