miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
846 5' -55.8 NC_000898.1 + 157629 0.66 0.940263
Target:  5'- gGGGGACgggggUGUGGcg-CCGacuCUGCCGCg -3'
miRNA:   3'- -CCCUUG-----GCACCuuaGGUgu-GGCGGCG- -5'
846 5' -55.8 NC_000898.1 + 3286 0.66 0.935546
Target:  5'- cGGAcgugcgagACCGagcGGGcUCCAU-CCGCCGCu -3'
miRNA:   3'- cCCU--------UGGCa--CCUuAGGUGuGGCGGCG- -5'
846 5' -55.8 NC_000898.1 + 156453 0.66 0.935546
Target:  5'- cGGAcgugcgagACCGagcGGGcUCCAU-CCGCCGCu -3'
miRNA:   3'- cCCU--------UGGCa--CCUuAGGUGuGGCGGCG- -5'
846 5' -55.8 NC_000898.1 + 46693 0.66 0.92489
Target:  5'- aGGGuuccguuaaauGGCCGUGaGAGUUCAUGCugugugaCGCCGUa -3'
miRNA:   3'- -CCC-----------UUGGCAC-CUUAGGUGUG-------GCGGCG- -5'
846 5' -55.8 NC_000898.1 + 9972 0.67 0.920012
Target:  5'- cGGGAcauCUGUGGA--CCAUGCaGCUGCc -3'
miRNA:   3'- -CCCUu--GGCACCUuaGGUGUGgCGGCG- -5'
846 5' -55.8 NC_000898.1 + 147008 0.67 0.920012
Target:  5'- ---uGCCGUguGGAAUCCGCAgCCGUCa- -3'
miRNA:   3'- cccuUGGCA--CCUUAGGUGU-GGCGGcg -5'
846 5' -55.8 NC_000898.1 + 10059 0.67 0.896086
Target:  5'- gGGGAGCCGUGGugcgCCuguCCGauaGCu -3'
miRNA:   3'- -CCCUUGGCACCuua-GGuguGGCgg-CG- -5'
846 5' -55.8 NC_000898.1 + 5266 0.67 0.889542
Target:  5'- cGGGcucGCgCGUGGGccaAUCgCGCcCCGUCGCg -3'
miRNA:   3'- -CCCu--UG-GCACCU---UAG-GUGuGGCGGCG- -5'
846 5' -55.8 NC_000898.1 + 158433 0.67 0.889542
Target:  5'- cGGGcucGCgCGUGGGccaAUCgCGCcCCGUCGCg -3'
miRNA:   3'- -CCCu--UG-GCACCU---UAG-GUGuGGCGGCG- -5'
846 5' -55.8 NC_000898.1 + 36912 0.7 0.786491
Target:  5'- cGGGAAgaGgaUGGAucgCCcucggACGCCGCCGCc -3'
miRNA:   3'- -CCCUUggC--ACCUua-GG-----UGUGGCGGCG- -5'
846 5' -55.8 NC_000898.1 + 3835 0.72 0.688106
Target:  5'- uGGGAggagcguuGCCGUGGAGgcguucgggggacuUCC-CGCCGaCGCg -3'
miRNA:   3'- -CCCU--------UGGCACCUU--------------AGGuGUGGCgGCG- -5'
846 5' -55.8 NC_000898.1 + 157003 0.72 0.688106
Target:  5'- uGGGAggagcguuGCCGUGGAGgcguucgggggacuUCC-CGCCGaCGCg -3'
miRNA:   3'- -CCCU--------UGGCACCUU--------------AGGuGUGGCgGCG- -5'
846 5' -55.8 NC_000898.1 + 152246 1.13 0.002063
Target:  5'- cGGGAACCGUGGAAUCCACACCGCCGCc -3'
miRNA:   3'- -CCCUUGGCACCUUAGGUGUGGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.