Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8465 | 5' | -54.9 | NC_002167.1 | + | 23696 | 0.66 | 0.688471 |
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Target: 5'- uGCCggaacaGCGGAGCGGGucauccGCACCAuACAGa -3' miRNA: 3'- cCGG------UGCCUUGUCCc-----UGUGGU-UGUCc -5' |
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| 8465 | 5' | -54.9 | NC_002167.1 | + | 4698 | 0.66 | 0.677401 |
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Target: 5'- cGGCgACGGuacCGGGGAUaACCuggaAGGg -3' miRNA: 3'- -CCGgUGCCuu-GUCCCUG-UGGuug-UCC- -5' |
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| 8465 | 5' | -54.9 | NC_002167.1 | + | 9315 | 0.66 | 0.643972 |
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Target: 5'- cGGCUGcCGGAGCuuuGGCugCGAUAGGu -3' miRNA: 3'- -CCGGU-GCCUUGuccCUGugGUUGUCC- -5' |
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| 8465 | 5' | -54.9 | NC_002167.1 | + | 10767 | 0.68 | 0.566045 |
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Target: 5'- gGGCUACGG-GCAGGGA-ACCAGg--- -3' miRNA: 3'- -CCGGUGCCuUGUCCCUgUGGUUgucc -5' |
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| 8465 | 5' | -54.9 | NC_002167.1 | + | 16769 | 0.68 | 0.555062 |
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Target: 5'- -aCCACGGcauACAGuGaGACGCC-ACAGGc -3' miRNA: 3'- ccGGUGCCu--UGUC-C-CUGUGGuUGUCC- -5' |
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| 8465 | 5' | -54.9 | NC_002167.1 | + | 5531 | 0.68 | 0.555062 |
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Target: 5'- gGGCUccugAUGGAACcGGGACGauUCAggaACAGGg -3' miRNA: 3'- -CCGG----UGCCUUGuCCCUGU--GGU---UGUCC- -5' |
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| 8465 | 5' | -54.9 | NC_002167.1 | + | 18290 | 0.7 | 0.43402 |
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Target: 5'- cGCCGCGGGcAUGGGGAuuggcguugggaacaCGCCGuCAGGc -3' miRNA: 3'- cCGGUGCCU-UGUCCCU---------------GUGGUuGUCC- -5' |
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| 8465 | 5' | -54.9 | NC_002167.1 | + | 19785 | 1 | 0.004079 |
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Target: 5'- aGGCCACGGAACA-GGACACCAACAGGu -3' miRNA: 3'- -CCGGUGCCUUGUcCCUGUGGUUGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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