Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8468 | 5' | -58.4 | NC_002167.1 | + | 5679 | 0.66 | 0.404353 |
|
Target: 5'- aGCUuucaGGCGGCGcGGaaacGGCGCAGg -3' miRNA: 3'- gCGGug--UCGCCGCaCCaa--UCGCGUCa -5' |
|||||||
| 8468 | 5' | -58.4 | NC_002167.1 | + | 15852 | 0.67 | 0.376973 |
|
Target: 5'- aCGUagaGCAgcGCGGUGUucGGgUAGCGCAGUu -3' miRNA: 3'- -GCGg--UGU--CGCCGCA--CCaAUCGCGUCA- -5' |
|||||||
| 8468 | 5' | -58.4 | NC_002167.1 | + | 18254 | 0.67 | 0.376973 |
|
Target: 5'- aGCCugAGCGuuaGUGGUgaUGGCGgAGg -3' miRNA: 3'- gCGGugUCGCcg-CACCA--AUCGCgUCa -5' |
|||||||
| 8468 | 5' | -58.4 | NC_002167.1 | + | 23136 | 0.68 | 0.318105 |
|
Target: 5'- gGCCAagugcGCGGCGcUGGUagcggagAGUGCGGUa -3' miRNA: 3'- gCGGUgu---CGCCGC-ACCAa------UCGCGUCA- -5' |
|||||||
| 8468 | 5' | -58.4 | NC_002167.1 | + | 12848 | 0.7 | 0.233821 |
|
Target: 5'- aGUguU-GCGGCGUGG-UGGCGCAGa -3' miRNA: 3'- gCGguGuCGCCGCACCaAUCGCGUCa -5' |
|||||||
| 8468 | 5' | -58.4 | NC_002167.1 | + | 32280 | 1.08 | 0.000354 |
|
Target: 5'- cCGCCACAGCGGCGUGGUUAGCGCAGUa -3' miRNA: 3'- -GCGGUGUCGCCGCACCAAUCGCGUCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home