Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8470 | 5' | -50.8 | NC_002167.1 | + | 15694 | 0.66 | 0.836746 |
Target: 5'- cGGUGGCUGcgCUCAUaaccAGACGUc -3' miRNA: 3'- -CUACCGACuaGGGUAgcuuUCUGCAa -5' |
|||||||
8470 | 5' | -50.8 | NC_002167.1 | + | 29953 | 0.66 | 0.80724 |
Target: 5'- uGAUGGCUGAUUuaaCCGUcCGgcAGAUGa- -3' miRNA: 3'- -CUACCGACUAG---GGUA-GCuuUCUGCaa -5' |
|||||||
8470 | 5' | -50.8 | NC_002167.1 | + | 2108 | 0.66 | 0.80724 |
Target: 5'- --aGGCUGAagUCCUgguuuGUCGgcGGGCGUUu -3' miRNA: 3'- cuaCCGACU--AGGG-----UAGCuuUCUGCAA- -5' |
|||||||
8470 | 5' | -50.8 | NC_002167.1 | + | 3070 | 1.07 | 0.002381 |
Target: 5'- cGAUGGCUGAUCCCAUCGAAAGACGUUg -3' miRNA: 3'- -CUACCGACUAGGGUAGCUUUCUGCAA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home