miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8472 3' -57.3 NC_002167.1 + 31838 0.66 0.518318
Target:  5'- --aGaACAGUAGCGCC-GCGCCauuUGCu -3'
miRNA:   3'- cgaC-UGUCAUUGCGGuCGCGGgc-GCG- -5'
8472 3' -57.3 NC_002167.1 + 11450 0.67 0.446374
Target:  5'- uGCUGAUGGUu-CGCuUGGCGUUCGgGCu -3'
miRNA:   3'- -CGACUGUCAuuGCG-GUCGCGGGCgCG- -5'
8472 3' -57.3 NC_002167.1 + 16479 0.69 0.362712
Target:  5'- aGCUGAUugaagccGUAccGCGCCaccAGCGCCUGCu- -3'
miRNA:   3'- -CGACUGu------CAU--UGCGG---UCGCGGGCGcg -5'
8472 3' -57.3 NC_002167.1 + 4648 0.69 0.354112
Target:  5'- cCUGAC-GUGAUGCCuGCaCCCaguGCGCg -3'
miRNA:   3'- cGACUGuCAUUGCGGuCGcGGG---CGCG- -5'
8472 3' -57.3 NC_002167.1 + 5092 0.7 0.3133
Target:  5'- uGCUGACcauccugugcgaAG-AGCGUCuGGCGCUgGCGCa -3'
miRNA:   3'- -CGACUG------------UCaUUGCGG-UCGCGGgCGCG- -5'
8472 3' -57.3 NC_002167.1 + 19284 0.72 0.218276
Target:  5'- --gGACAGcuccCGCCAGCcagGUCCGCGCu -3'
miRNA:   3'- cgaCUGUCauu-GCGGUCG---CGGGCGCG- -5'
8472 3' -57.3 NC_002167.1 + 1494 0.72 0.212528
Target:  5'- gGCUGACAGau---CCAGC-CCCGCGUa -3'
miRNA:   3'- -CGACUGUCauugcGGUCGcGGGCGCG- -5'
8472 3' -57.3 NC_002167.1 + 5943 0.73 0.190823
Target:  5'- cGCUGAaaaCAauaagguucuucGUGAUGCCAcccGCGCCgGCGCg -3'
miRNA:   3'- -CGACU---GU------------CAUUGCGGU---CGCGGgCGCG- -5'
8472 3' -57.3 NC_002167.1 + 5043 0.73 0.175844
Target:  5'- cGCcuACGGUAAaggUGCCGGCgGCCUGCGCc -3'
miRNA:   3'- -CGacUGUCAUU---GCGGUCG-CGGGCGCG- -5'
8472 3' -57.3 NC_002167.1 + 5186 0.74 0.16192
Target:  5'- uGCUGuCGGgcgauaauGCGCCAGCGCCaGaCGCu -3'
miRNA:   3'- -CGACuGUCau------UGCGGUCGCGGgC-GCG- -5'
8472 3' -57.3 NC_002167.1 + 10904 0.76 0.125933
Target:  5'- gGCUGGCAcuuaauaAGCGCUaccucgaagAGCGCCUGCGCg -3'
miRNA:   3'- -CGACUGUca-----UUGCGG---------UCGCGGGCGCG- -5'
8472 3' -57.3 NC_002167.1 + 10719 1.14 0.000186
Target:  5'- uGCUGACAGUAACGCCAGCGCCCGCGCa -3'
miRNA:   3'- -CGACUGUCAUUGCGGUCGCGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.