miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8473 5' -55.1 NC_002167.1 + 18001 0.66 0.609222
Target:  5'- --cGCGCgGCuaccuGCGCcAGGUUGCCCu -3'
miRNA:   3'- gguUGUGaCGu----CGCGuUCCGAUGGGc -5'
8473 5' -55.1 NC_002167.1 + 9301 0.67 0.542114
Target:  5'- -aGACACUGUGGC-UAcGGCUGCCgGa -3'
miRNA:   3'- ggUUGUGACGUCGcGUuCCGAUGGgC- -5'
8473 5' -55.1 NC_002167.1 + 18356 0.68 0.524596
Target:  5'- cCCAACGCcaauccccaugcccGCGGCGUAAuaCUGCCCGu -3'
miRNA:   3'- -GGUUGUGa-------------CGUCGCGUUccGAUGGGC- -5'
8473 5' -55.1 NC_002167.1 + 17045 0.68 0.498739
Target:  5'- aCGAUAUucgcagGCGGCGacuGGUUGCCCGg -3'
miRNA:   3'- gGUUGUGa-----CGUCGCguuCCGAUGGGC- -5'
8473 5' -55.1 NC_002167.1 + 7646 0.68 0.488133
Target:  5'- aCCAcCucCUGcCAGCGCAgccAGGCUucACCUGa -3'
miRNA:   3'- -GGUuGu-GAC-GUCGCGU---UCCGA--UGGGC- -5'
8473 5' -55.1 NC_002167.1 + 9407 0.68 0.474506
Target:  5'- gCCAgaaagaacgaaauuGCGCUcGCAGCuGCAAGggcugaaucuGCUACCCa -3'
miRNA:   3'- -GGU--------------UGUGA-CGUCG-CGUUC----------CGAUGGGc -5'
8473 5' -55.1 NC_002167.1 + 2087 0.73 0.266683
Target:  5'- aCCAAUaacgGCUGguGgGCAAGGCUGaaguCCUGg -3'
miRNA:   3'- -GGUUG----UGACguCgCGUUCCGAU----GGGC- -5'
8473 5' -55.1 NC_002167.1 + 16389 0.75 0.198341
Target:  5'- aCCAGCGCUGUGGUGUAgcggcuuuucguGGuGCUGCUCGa -3'
miRNA:   3'- -GGUUGUGACGUCGCGU------------UC-CGAUGGGC- -5'
8473 5' -55.1 NC_002167.1 + 14383 0.75 0.182552
Target:  5'- gCCuuGCGCUGCAGUGUu-GGUUACCCc -3'
miRNA:   3'- -GGu-UGUGACGUCGCGuuCCGAUGGGc -5'
8473 5' -55.1 NC_002167.1 + 14324 1.12 0.000389
Target:  5'- aCCAACACUGCAGCGCAAGGCUACCCGg -3'
miRNA:   3'- -GGUUGUGACGUCGCGUUCCGAUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.