Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8476 | 3' | -38.9 | NC_002167.1 | + | 12851 | 0.67 | 0.999998 |
Target: 5'- -gUUGCGGCGugg---UGGCGCA-GAa -3' miRNA: 3'- aaAAUGCUGUuuuuuaAUCGCGUuCU- -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 24796 | 0.67 | 0.999994 |
Target: 5'- --aUAUGAgCAAAGAAUUuuaCGCAAGAc -3' miRNA: 3'- aaaAUGCU-GUUUUUUAAuc-GCGUUCU- -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 282 | 0.67 | 0.999999 |
Target: 5'- aUUUACG-CAAAGAAg-AGCGCAu-- -3' miRNA: 3'- aAAAUGCuGUUUUUUaaUCGCGUucu -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 31830 | 0.67 | 0.999996 |
Target: 5'- --aUAUGACGAGAAcagUAGCGCc--- -3' miRNA: 3'- aaaAUGCUGUUUUUua-AUCGCGuucu -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 5687 | 0.68 | 0.999987 |
Target: 5'- ---gGCGGCGcgGAAacGGCGCAGGc -3' miRNA: 3'- aaaaUGCUGUuuUUUaaUCGCGUUCu -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 36134 | 0.69 | 0.999889 |
Target: 5'- ---aACGGCAuGAGguuGUUAGCGCAAc- -3' miRNA: 3'- aaaaUGCUGUuUUU---UAAUCGCGUUcu -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 35493 | 0.7 | 0.999848 |
Target: 5'- ---cGCGACGccg----GGCGCAAGAu -3' miRNA: 3'- aaaaUGCUGUuuuuuaaUCGCGUUCU- -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 9759 | 0.72 | 0.998338 |
Target: 5'- ---aACGACAAAAGAcccgUAGCGCcAGu -3' miRNA: 3'- aaaaUGCUGUUUUUUa---AUCGCGuUCu -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 2675 | 0.73 | 0.99743 |
Target: 5'- -gUUGCGAUGGAGGAccAGCaGCGAGAu -3' miRNA: 3'- aaAAUGCUGUUUUUUaaUCG-CGUUCU- -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 32273 | 0.74 | 0.99437 |
Target: 5'- ---aGCGGCGu--GGUUAGCGCAguAGAu -3' miRNA: 3'- aaaaUGCUGUuuuUUAAUCGCGU--UCU- -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 21111 | 0.8 | 0.891685 |
Target: 5'- -----aGACAGAGcAUUAGCGCAAGGu -3' miRNA: 3'- aaaaugCUGUUUUuUAAUCGCGUUCU- -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 19501 | 0.83 | 0.778713 |
Target: 5'- --gUACGACGAGAAcAUUGGCGCGugGGAg -3' miRNA: 3'- aaaAUGCUGUUUUU-UAAUCGCGU--UCU- -5' |
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8476 | 3' | -38.9 | NC_002167.1 | + | 21013 | 1.1 | 0.034113 |
Target: 5'- aUUUUACGACAAAAAAUUAGCGCAAGAa -3' miRNA: 3'- -AAAAUGCUGUUUUUUAAUCGCGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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