miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8481 3' -52.9 NC_002169.1 + 86333 0.66 0.965952
Target:  5'- uUGGUAuuGUCGUcGUCGUCGUCgucgggauuaaaCUGUUGAg -3'
miRNA:   3'- -ACCAU--CAGCA-UAGCAGCAG------------GGCGAUU- -5'
8481 3' -52.9 NC_002169.1 + 74732 0.66 0.958884
Target:  5'- ----cGUCGUcGUCGUCGUCuCCGCc-- -3'
miRNA:   3'- accauCAGCA-UAGCAGCAG-GGCGauu -5'
8481 3' -52.9 NC_002169.1 + 117742 0.66 0.954997
Target:  5'- cGGUuuuugaGGUCG--UCGUCGUCgCCGCc-- -3'
miRNA:   3'- aCCA------UCAGCauAGCAGCAG-GGCGauu -5'
8481 3' -52.9 NC_002169.1 + 51431 0.67 0.950869
Target:  5'- gGGUAGggugcCGUugaCGUCGUCgCCGCa-- -3'
miRNA:   3'- aCCAUCa----GCAua-GCAGCAG-GGCGauu -5'
8481 3' -52.9 NC_002169.1 + 49318 0.67 0.950869
Target:  5'- cGGUAucggcgccaucGUCGUcGUCGUCGUCgUCGCg-- -3'
miRNA:   3'- aCCAU-----------CAGCA-UAGCAGCAG-GGCGauu -5'
8481 3' -52.9 NC_002169.1 + 86748 0.67 0.946495
Target:  5'- aUGaGUcGUCGUcGUCGUCGUCgUCGUUGAa -3'
miRNA:   3'- -AC-CAuCAGCA-UAGCAGCAG-GGCGAUU- -5'
8481 3' -52.9 NC_002169.1 + 108894 0.68 0.926489
Target:  5'- -cGUuGUCGUcGUCGUCGUCgCCGCc-- -3'
miRNA:   3'- acCAuCAGCA-UAGCAGCAG-GGCGauu -5'
8481 3' -52.9 NC_002169.1 + 3199 0.69 0.888891
Target:  5'- aUGGUGGUUGUGaugauUCGUCGUCgUCGUc-- -3'
miRNA:   3'- -ACCAUCAGCAU-----AGCAGCAG-GGCGauu -5'
8481 3' -52.9 NC_002169.1 + 120186 0.7 0.850941
Target:  5'- -cGUAGUCGUcgUGUCGUUUgCGCUAAc -3'
miRNA:   3'- acCAUCAGCAuaGCAGCAGG-GCGAUU- -5'
8481 3' -52.9 NC_002169.1 + 99534 0.72 0.760303
Target:  5'- gUGGUGGUaGUGUCGUCGUCgUCGUc-- -3'
miRNA:   3'- -ACCAUCAgCAUAGCAGCAG-GGCGauu -5'
8481 3' -52.9 NC_002169.1 + 2990 1.06 0.007023
Target:  5'- aUGGUAGUCGUAUCGUCGUCCCGCUAAu -3'
miRNA:   3'- -ACCAUCAGCAUAGCAGCAGGGCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.