miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8483 5' -57.9 NC_002169.1 + 77651 0.66 0.831501
Target:  5'- cGCAcUCGACGccguuaaacaaaugaUUGGC-GGGGCAuucuUCGAc -3'
miRNA:   3'- uCGU-AGCUGC---------------AGCCGuCCCCGU----AGCU- -5'
8483 5' -57.9 NC_002169.1 + 55327 0.66 0.802332
Target:  5'- uGGCGgugacgaCGACGacagCGGCGGcGGCAUCGc -3'
miRNA:   3'- -UCGUa------GCUGCa---GCCGUCcCCGUAGCu -5'
8483 5' -57.9 NC_002169.1 + 25343 0.66 0.801446
Target:  5'- uGCAUCacuuguaGGCGagCGGUccGGGCGUCGAc -3'
miRNA:   3'- uCGUAG-------CUGCa-GCCGucCCCGUAGCU- -5'
8483 5' -57.9 NC_002169.1 + 133654 0.67 0.784333
Target:  5'- -cCAUCGGCGUCGGCAuacaGGGUuuggcCGAc -3'
miRNA:   3'- ucGUAGCUGCAGCCGUc---CCCGua---GCU- -5'
8483 5' -57.9 NC_002169.1 + 96909 0.67 0.775126
Target:  5'- cAGCGUCGucgacacCGUCGGCA---GCGUCGAc -3'
miRNA:   3'- -UCGUAGCu------GCAGCCGUcccCGUAGCU- -5'
8483 5' -57.9 NC_002169.1 + 30490 0.67 0.765794
Target:  5'- -cCAUCGGCGgCGGCAacgugagcGGcGGCGUCGu -3'
miRNA:   3'- ucGUAGCUGCaGCCGU--------CC-CCGUAGCu -5'
8483 5' -57.9 NC_002169.1 + 130781 0.67 0.746787
Target:  5'- cGC-UCGaaGCGUgGGCAGGacgcuguuGGCGUCGGu -3'
miRNA:   3'- uCGuAGC--UGCAgCCGUCC--------CCGUAGCU- -5'
8483 5' -57.9 NC_002169.1 + 6390 0.68 0.707656
Target:  5'- aGGC-UCGGCGgcggCGGCGGcGGCggCGAc -3'
miRNA:   3'- -UCGuAGCUGCa---GCCGUCcCCGuaGCU- -5'
8483 5' -57.9 NC_002169.1 + 49545 0.69 0.616756
Target:  5'- cGGCGUCGcCGccaaUGGCGGGGGCAa--- -3'
miRNA:   3'- -UCGUAGCuGCa---GCCGUCCCCGUagcu -5'
8483 5' -57.9 NC_002169.1 + 127949 0.72 0.469372
Target:  5'- cGGCggCGGCGgCGGCGGcGGCGUCGu -3'
miRNA:   3'- -UCGuaGCUGCaGCCGUCcCCGUAGCu -5'
8483 5' -57.9 NC_002169.1 + 85752 0.72 0.450985
Target:  5'- uGGCAUCGuCGUCGaaaAGGGGCGcaaauUCGAc -3'
miRNA:   3'- -UCGUAGCuGCAGCcg-UCCCCGU-----AGCU- -5'
8483 5' -57.9 NC_002169.1 + 85494 0.73 0.398322
Target:  5'- gAGCAUCGGCGgu-GCGGuGGGCAUCu- -3'
miRNA:   3'- -UCGUAGCUGCagcCGUC-CCCGUAGcu -5'
8483 5' -57.9 NC_002169.1 + 6945 0.75 0.319819
Target:  5'- cGGCAUCGAUGUCGaCAucGGCAUCGAc -3'
miRNA:   3'- -UCGUAGCUGCAGCcGUccCCGUAGCU- -5'
8483 5' -57.9 NC_002169.1 + 6909 1.08 0.001967
Target:  5'- aAGCAUCGACGUCGGCAGGGGCAUCGAc -3'
miRNA:   3'- -UCGUAGCUGCAGCCGUCCCCGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.