miRNA display CGI


Results 41 - 60 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8484 3' -42.1 NC_002169.1 + 42255 0.97 0.242648
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 10935 0.97 0.236062
Target:  5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 120037 0.98 0.211202
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 119418 0.98 0.211202
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 104956 1.03 0.118356
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUACUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 10709 0.88 0.580463
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 11036 0.88 0.580463
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 10817 0.88 0.603615
Target:  5'- -cUAGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUaCUAgAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 41873 0.71 0.999911
Target:  5'- ----aUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 10326 0.71 0.999911
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaauCAUGUACU--------AGAAACGaaAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105322 0.72 0.999284
Target:  5'- --aAGUACAcaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUacUAgAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 41772 0.75 0.994893
Target:  5'- ----aUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 119325 0.75 0.992941
Target:  5'- -aUAG-AC--GAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCaUGuaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 52662 0.77 0.981107
Target:  5'- uUUUAGUACAcGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAgAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 105202 0.79 0.954089
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUcAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 41999 0.8 0.927925
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 52898 0.8 0.927925
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUCAUGUAcUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 71637 0.81 0.89408
Target:  5'- --cAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGcAG- -5'
8484 3' -42.1 NC_002169.1 + 11173 0.84 0.784665
Target:  5'- ----aUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGCAG- -5'
8484 3' -42.1 NC_002169.1 + 105091 0.87 0.661778
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGcAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.