miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 3' -40.7 NC_002169.1 + 71829 1.05 0.1228
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 104769 0.93 0.458634
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- aaaucAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 104833 1.11 0.058744
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 104956 1.02 0.175308
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 104956 0.73 0.999858
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAuGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105039 0.73 0.99968
Target:  5'- -aUAuUGCAUcagccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUcAUGUA----------CUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105091 1 0.214491
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105145 0.91 0.536357
Target:  5'- -----cACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucaUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105202 0.75 0.998011
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUcAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105287 1 0.226992
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaAUCAUGUACUAGAAACGAAAGUAg -5'
8485 3' -40.7 NC_002169.1 + 105322 0.71 0.999993
Target:  5'- --aAGUACAcaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUacUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105400 0.99 0.246896
Target:  5'- cUUUAGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105407 0.83 0.899208
Target:  5'- cUUUAaUACAcGAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AAAUcAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105501 0.91 0.536357
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105514 0.78 0.990502
Target:  5'- --cGGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aaaUCAUGUAcUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105600 0.72 0.999958
Target:  5'- ----aUACAcaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105690 0.71 0.99997
Target:  5'- ----aUACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGuAG- -5'
8485 3' -40.7 NC_002169.1 + 119325 0.73 0.99968
Target:  5'- -aUAG-AC--GAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCaUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119418 0.97 0.307033
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119518 0.95 0.38733
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUUAUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.