Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8485 | 3' | -40.7 | NC_002169.1 | + | 119602 | 0.94 | 0.437533 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 119616 | 1.11 | 0.058744 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAUCAUGUACUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 119796 | 0.96 | 0.34107 |
Target: 5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 120037 | 0.97 | 0.307033 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 120230 | 0.83 | 0.913463 |
Target: 5'- ----aUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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