miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8485 3' -40.7 NC_002169.1 + 41772 0.73 0.999812
Target:  5'- ----aUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105091 1 0.214491
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 104956 1.02 0.175308
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 104769 0.93 0.458634
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- aaaucAUGUACUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 52784 0.91 0.536357
Target:  5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105202 0.75 0.998011
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUcAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11281 0.75 0.998685
Target:  5'- aUUUAaUACAcaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUcAUGUacUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 119325 0.73 0.99968
Target:  5'- -aUAG-AC--GAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCaUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11173 0.83 0.913463
Target:  5'- ----aUGCAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11704 0.72 0.999921
Target:  5'- aUUUGGUugAUGAUCUUcauuugaggaUGaUUUCAUCg -3'
miRNA:   3'- -AAAUCAugUACUAGAA----------ACgAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105322 0.71 0.999993
Target:  5'- --aAGUACAcaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUacUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10326 0.69 1
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaauCAUGUACU--------AGAAACGaaAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105407 0.83 0.899208
Target:  5'- cUUUAaUACAcGAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AAAUcAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10817 0.86 0.768375
Target:  5'- -cUAGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUaCUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 41873 0.84 0.883715
Target:  5'- ----aUACAcGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11036 0.87 0.746273
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 10709 0.87 0.746273
Target:  5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 52662 0.9 0.594554
Target:  5'- uUUUAGUACAcGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUCAUGUaCUAgAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 11570 0.9 0.594554
Target:  5'- -cUAGUACucGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUCAUGuaCUAGAAACGAAAGUAG- -5'
8485 3' -40.7 NC_002169.1 + 105501 0.91 0.536357
Target:  5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.