Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8485 | 3' | -40.7 | NC_002169.1 | + | 105407 | 0.83 | 0.899208 |
Target: 5'- cUUUAaUACAcGAUCUUUGCUUUCAUCc -3' miRNA: 3'- -AAAUcAUGUaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 41873 | 0.84 | 0.883715 |
Target: 5'- ----aUACAcGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaaucAUGUaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 10817 | 0.86 | 0.768375 |
Target: 5'- -cUAGUACAcGAUgUUUGCUUUCGUCg -3' miRNA: 3'- aaAUCAUGUaCUAgAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 11036 | 0.87 | 0.746273 |
Target: 5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGuaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 10709 | 0.87 | 0.746273 |
Target: 5'- -cUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGuaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 42065 | 0.9 | 0.606345 |
Target: 5'- aUUUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGuaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 52662 | 0.9 | 0.594554 |
Target: 5'- uUUUAGUACAcGAUgUUUGCUUUCAUCg -3' miRNA: 3'- -AAAUCAUGUaCUAgAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 11570 | 0.9 | 0.594554 |
Target: 5'- -cUAGUACucGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaAUCAUGuaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 53233 | 0.91 | 0.559444 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaucAUGUACUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 105501 | 0.91 | 0.536357 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 52784 | 0.91 | 0.536357 |
Target: 5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 105145 | 0.91 | 0.536357 |
Target: 5'- -----cACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaaucaUGUACUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 52978 | 0.91 | 0.536357 |
Target: 5'- uUUUAGUACAccAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAUCAUGUacUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 11366 | 0.93 | 0.469387 |
Target: 5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUcAUGUACUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 104769 | 0.93 | 0.458634 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- aaaucAUGUACUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 52898 | 0.93 | 0.448015 |
Target: 5'- uUUUAGUACAUcAUCUUUGCUUUCAUCc -3' miRNA: 3'- -AAAUCAUGUAcUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 41999 | 0.93 | 0.448015 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCAUCu -3' miRNA: 3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 119602 | 0.94 | 0.437533 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 71637 | 0.95 | 0.397065 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaaUCAUGUaCUAGAAACGAAAGUAG- -5' |
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8485 | 3' | -40.7 | NC_002169.1 | + | 11442 | 0.95 | 0.38733 |
Target: 5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUaCUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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