miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 5' -46.8 NC_002169.1 + 42158 0.86 0.379734
Target:  5'- -aGAUGAAAGCAAAGAUCGuGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 71795 0.86 0.370851
Target:  5'- -cGAUGAAAGCAAAGAUCGuGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 105253 0.87 0.345063
Target:  5'- -cGAUGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 105117 0.89 0.275606
Target:  5'- uUGGACGAAAGCAAAGAUCauGUACUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 119760 0.9 0.235813
Target:  5'- -cGACGAAAGCAAAGAUCGuGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 105571 0.92 0.195599
Target:  5'- uUGGAUGAAAGCAAAGAUCGuGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11443 0.77 0.798121
Target:  5'- -cGAUGAAAGCAAAGAUUGuGUAUUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 104995 0.76 0.861531
Target:  5'- -cGAUGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 134387 0.67 0.999121
Target:  5'- cUGGGCGGcGGGCuGGGAUUGAGcGCg- -3'
miRNA:   3'- -ACCUGCU-UUCGuUUCUAGCUCaUGau -5'
8487 5' -46.8 NC_002169.1 + 25796 0.69 0.996636
Target:  5'- -aGGCGAGccGGCAugcGGGAUCGGGUAUUu -3'
miRNA:   3'- acCUGCUU--UCGU---UUCUAGCUCAUGAu -5'
8487 5' -46.8 NC_002169.1 + 84422 0.69 0.994489
Target:  5'- aGGAUGcGAGUucAGGAUCGAauGUACUAc -3'
miRNA:   3'- aCCUGCuUUCGu-UUCUAGCU--CAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 100213 0.69 0.993566
Target:  5'- cGGACGAcAAGCGAgcugaucuGGAUCGAGa---- -3'
miRNA:   3'- aCCUGCU-UUCGUU--------UCUAGCUCaugau -5'
8487 5' -46.8 NC_002169.1 + 37286 0.7 0.990036
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGAugACg- -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAGCUcaUGau -5'
8487 5' -46.8 NC_002169.1 + 10677 0.71 0.985142
Target:  5'- -cGAUGAAAGCAAAGAUCGuuGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCu-CAUgau -5'
8487 5' -46.8 NC_002169.1 + 11330 0.74 0.936514
Target:  5'- -cGACGAAAGCAAAGAUCG--UGCa- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCucAUGau -5'
8487 5' -46.8 NC_002169.1 + 52823 0.74 0.936514
Target:  5'- -cGAUGAAAGCAAAcAUCGuGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 104925 0.74 0.919374
Target:  5'- -cGACGAAAGCAAAGAUCauGUAUUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 42348 0.75 0.885223
Target:  5'- -cGAUGAAAGCAAAGAUCauGUACUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 42417 0.76 0.861531
Target:  5'- -cGAUGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 53202 0.76 0.861531
Target:  5'- -cGAUGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.