Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8488 | 3' | -43.8 | NC_002169.1 | + | 120039 | 1.05 | 0.066902 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 52784 | 1.02 | 0.092847 |
Target: 5'- --cGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 10937 | 1.04 | 0.07319 |
Target: 5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 41999 | 0.9 | 0.396716 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCaUCu -3' miRNA: 3'- uuaUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 104769 | 0.9 | 0.406257 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 41873 | 0.81 | 0.826282 |
Target: 5'- ----aUACACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuaucAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 105322 | 0.79 | 0.886433 |
Target: 5'- --aAGUACACaAUgUUUGCUUUCGUCc -3' miRNA: 3'- uuaUCAUGUGcUAgAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 105412 | 0.79 | 0.901211 |
Target: 5'- ----aUACACGAUCUUUGCUUUCaUCc -3' miRNA: 3'- uuaucAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 52900 | 0.75 | 0.980251 |
Target: 5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3' miRNA: 3'- uuAUCAUGUGcUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 11570 | 0.83 | 0.744685 |
Target: 5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGuGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 52664 | 0.84 | 0.66663 |
Target: 5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAgAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 11286 | 0.67 | 0.999982 |
Target: 5'- ----aUACACaAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuaucAUGUGcUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 41109 | 0.67 | 0.999982 |
Target: 5'- cGAUAGUGCG-GAUCggUGCUcUCGa- -3' miRNA: 3'- -UUAUCAUGUgCUAGaaACGAaAGCag -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 10326 | 0.67 | 0.999991 |
Target: 5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3' miRNA: 3'- uuauCAUGUGCU--------AGAAACGaaAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 59833 | 0.66 | 0.999998 |
Target: 5'- ---uGU-CGCGAUCgaugUUGCcguUUUCGUCg -3' miRNA: 3'- uuauCAuGUGCUAGa---AACG---AAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 119325 | 0.83 | 0.733801 |
Target: 5'- ----aUAgACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaucAUgUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 105207 | 0.87 | 0.530808 |
Target: 5'- ----aUACACGAUCUUUGCUUUUGUCc -3' miRNA: 3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 53042 | 0.89 | 0.425764 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 104835 | 0.89 | 0.415941 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 42257 | 0.89 | 0.415941 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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