Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8488 | 3' | -43.8 | NC_002169.1 | + | 41772 | 0.81 | 0.81673 |
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Target: 5'- ----aUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaucAUGuGCUAGAAACGAAAGCAG- -5' |
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| 8488 | 3' | -43.8 | NC_002169.1 | + | 11570 | 0.83 | 0.744685 |
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Target: 5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGuGCUAGAAACGAAAGcAG- -5' |
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| 8488 | 3' | -43.8 | NC_002169.1 | + | 119325 | 0.83 | 0.733801 |
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Target: 5'- ----aUAgACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaucAUgUGCUAGAAACGAAAGCAG- -5' |
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| 8488 | 3' | -43.8 | NC_002169.1 | + | 52664 | 0.84 | 0.66663 |
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Target: 5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAgAAACGAAAGcAG- -5' |
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| 8488 | 3' | -43.8 | NC_002169.1 | + | 105207 | 0.87 | 0.530808 |
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Target: 5'- ----aUACACGAUCUUUGCUUUUGUCc -3' miRNA: 3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5' |
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| 8488 | 3' | -43.8 | NC_002169.1 | + | 53042 | 0.89 | 0.425764 |
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Target: 5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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| 8488 | 3' | -43.8 | NC_002169.1 | + | 104835 | 0.89 | 0.415941 |
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Target: 5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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| 8488 | 3' | -43.8 | NC_002169.1 | + | 11440 | 1.08 | 0.041254 |
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Target: 5'- gAAUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -UUAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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