miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 5' -40.3 NC_002169.1 + 119580 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 120199 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 52942 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 119635 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11332 0.74 0.99987
Target:  5'- gUCGAcGAAAGCAAAGAUcGUGcAUUu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAaCACaUAAu -5'
8488 5' -40.3 NC_002169.1 + 105376 0.75 0.999383
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAGAUcGUGUAUUAa -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUCUAaCACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 53060 0.76 0.998504
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 119354 0.77 0.997764
Target:  5'- uUCGAUaAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- -AGCUAcUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 52825 0.77 0.997764
Target:  5'- uUCGAUGAAAGCAAAcAUcGUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 104927 0.78 0.995353
Target:  5'- gUCGAcGAAAGCAAAGAUcaUGUAUUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAacACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 42222 0.79 0.989739
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAACACAuaau -5'
8488 5' -40.3 NC_002169.1 + 42291 0.79 0.989739
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAACACAuaau -5'
8488 5' -40.3 NC_002169.1 + 10551 0.79 0.988152
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUACUUUCGUUUcUAACACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11732 0.8 0.976936
Target:  5'- gUCGAUGAAAGCAAAGAUcGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAaC-------------ACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 53204 0.81 0.97121
Target:  5'- gUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 42419 0.81 0.97121
Target:  5'- gUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 10849 0.81 0.97121
Target:  5'- gUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 119452 0.81 0.97121
Target:  5'- uUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11604 0.81 0.97121
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 104997 0.81 0.97121
Target:  5'- uUCGAUGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAacACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.