Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8489 | 3' | -41.6 | NC_002169.1 | + | 120230 | 0.66 | 1 |
Target: 5'- ----aUACAcGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agaucAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 42065 | 0.73 | 0.999388 |
Target: 5'- aUUUAGUACucGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 53233 | 0.74 | 0.998808 |
Target: 5'- ----aUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 105145 | 0.75 | 0.998201 |
Target: 5'- -----cACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- agaucaUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 52978 | 0.75 | 0.997811 |
Target: 5'- uUUUAGUACAccAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUacUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11366 | 0.76 | 0.99371 |
Target: 5'- uUUUAaUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUcAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 42192 | 0.78 | 0.982836 |
Target: 5'- -aUAGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 119518 | 0.78 | 0.980528 |
Target: 5'- uUUUAGUACAcGAUcUUUGCUUUUAUCg -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11132 | 0.78 | 0.977996 |
Target: 5'- gUUUAaUACAUGAUcUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUcAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 119796 | 0.79 | 0.965415 |
Target: 5'- cUUUGGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11638 | 1.14 | 0.033155 |
Target: 5'- uUCUAGUACAUGAUGUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUACUACAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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