miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8489 3' -41.6 NC_002169.1 + 119796 0.79 0.965415
Target:  5'- cUUUGGUACAcGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 11132 0.78 0.977996
Target:  5'- gUUUAaUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUcAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 10713 0.86 0.751329
Target:  5'- uUUUAGUACAcaAUGUUUGCUUUCAUCu -3'
miRNA:   3'- -AGAUCAUGUacUACAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 11173 0.66 1
Target:  5'- ----aUGCAcGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 42188 0.91 0.512162
Target:  5'- -gUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- agAUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 105407 0.67 1
Target:  5'- cUUUAaUACAcGAUcUUUGCUUUCAUCc -3'
miRNA:   3'- -AGAUcAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 41873 0.67 1
Target:  5'- ----aUACAcGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- agaucAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 53123 0.87 0.706753
Target:  5'- --cAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 11568 0.82 0.900201
Target:  5'- cUCUAGUACucGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 119418 0.8 0.948477
Target:  5'- uUUUAGUACAcGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 120037 0.8 0.948477
Target:  5'- uUUUAGUACAcGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 10935 0.79 0.965415
Target:  5'- cUUUGGUACAcGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 10707 0.79 0.968948
Target:  5'- cUCUAGUACucGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 11034 0.79 0.968948
Target:  5'- cUCUAGUACucGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 119602 0.77 0.991426
Target:  5'- --cAGUACAcGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 41999 0.76 0.992638
Target:  5'- --cAGUACAcGAUcUUUGCUUUCAUCu -3'
miRNA:   3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 104769 0.76 0.99371
Target:  5'- ----aUACAUGAUcUUUGCUUUCGUCa -3'
miRNA:   3'- agaucAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 52784 0.75 0.998201
Target:  5'- --cGGUACAcGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 105501 0.75 0.998201
Target:  5'- --cAGUACAcGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 111087 0.68 1
Target:  5'- -gUAGUACAUGuUGUgcaagUGUUUugUCGUCu -3'
miRNA:   3'- agAUCAUGUACuACAa----ACGAA--AGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.