miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 5' -44.6 NC_002169.1 + 11474 0.76 0.95895
Target:  5'- gUCGAUGAAAGCAAAcAUCauGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 41904 0.76 0.95479
Target:  5'- -gGAcGAAAGCAAA-AUCGAGUACUAa -3'
miRNA:   3'- agCUaCUUUCGUUUcUAGCUCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 118888 0.76 0.940635
Target:  5'- aUCGAUGAGAGCcuguAGAUCGGccgugaauuguuGUGCUGa -3'
miRNA:   3'- -AGCUACUUUCGuu--UCUAGCU------------CAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 52942 0.77 0.935344
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGau -5'
8490 5' -44.6 NC_002169.1 + 119635 0.77 0.935344
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGau -5'
8490 5' -44.6 NC_002169.1 + 11096 0.77 0.935344
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGau -5'
8490 5' -44.6 NC_002169.1 + 10978 0.77 0.923892
Target:  5'- cUCGAcGAAAGCAAAcAUCGuGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUcUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 105441 0.78 0.911278
Target:  5'- uUCGAcGAAAGCAAAGAUUGuGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCuCAUGau -5'
8490 5' -44.6 NC_002169.1 + 11604 0.78 0.890207
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 53060 0.79 0.866654
Target:  5'- -gGAUGAAAGCAAAGAU-GAuGUACUAa -3'
miRNA:   3'- agCUACUUUCGUUUCUAgCU-CAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 53284 0.79 0.85828
Target:  5'- gUCGAcGAAAGCAAAGAUCauGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 11068 0.8 0.831702
Target:  5'- uUCGAcGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 10741 0.8 0.831702
Target:  5'- uUCGAcGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 105660 0.83 0.6975
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUACUGu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 104869 0.83 0.675178
Target:  5'- -gGAcGAAAGCAAAGAUCGAGUagGCUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCUCA--UGAU- -5'
8490 5' -44.6 NC_002169.1 + 41928 0.83 0.663948
Target:  5'- -gGAcGAAAGCAAAGAUCGAGUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCUCAUGau -5'
8490 5' -44.6 NC_002169.1 + 42032 0.83 0.663948
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 11602 0.83 0.663948
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 119580 0.84 0.641403
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 120199 0.84 0.641403
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.