Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8491 | 5' | -57.8 | NC_002169.1 | + | 45931 | 0.69 | 0.641852 |
Target: 5'- --uGCgUCGuCCGgCAcCGCCGCCGCc -3' miRNA: 3'- aauCGgAGCuGGCaGUuGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 100403 | 0.69 | 0.641852 |
Target: 5'- -cGGUaucgUUCaGACCGUCGGCGCUaaagGCCACg -3' miRNA: 3'- aaUCG----GAG-CUGGCAGUUGCGG----CGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 42795 | 0.69 | 0.639792 |
Target: 5'- cUAGCgCUCGACacgcugugcguaGUCAaagGCGgCGCCGCg -3' miRNA: 3'- aAUCG-GAGCUGg-----------CAGU---UGCgGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 41293 | 0.69 | 0.621253 |
Target: 5'- --uGUCguuGCCGUCGACGUCGUCACg -3' miRNA: 3'- aauCGGagcUGGCAGUUGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 46059 | 0.69 | 0.600689 |
Target: 5'- --cGUCUCGauGCUGUCcuCGCCGUCACc -3' miRNA: 3'- aauCGGAGC--UGGCAGuuGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 39260 | 0.7 | 0.580218 |
Target: 5'- -aGGCgUCGgugagugcACCGUCGacgACGCCGuCCGCg -3' miRNA: 3'- aaUCGgAGC--------UGGCAGU---UGCGGC-GGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 39377 | 0.7 | 0.580218 |
Target: 5'- --uGCCgaUCGgcaccGCCGUCGucauCGCCGCCAUg -3' miRNA: 3'- aauCGG--AGC-----UGGCAGUu---GCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 102091 | 0.71 | 0.519913 |
Target: 5'- -cGGCCggaGAgCG-CAACGUCGCCACc -3' miRNA: 3'- aaUCGGag-CUgGCaGUUGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 96930 | 0.72 | 0.452934 |
Target: 5'- -cAGCgUCGACCG-CAuCGCCGUCAa -3' miRNA: 3'- aaUCGgAGCUGGCaGUuGCGGCGGUg -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 34907 | 0.72 | 0.434664 |
Target: 5'- -gAGCacuaUC-ACCGUCAACGUCGCUGCg -3' miRNA: 3'- aaUCGg---AGcUGGCAGUUGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 57263 | 0.73 | 0.41683 |
Target: 5'- -gAGCCUCGaACUGUCcacCGCCGUCAa -3' miRNA: 3'- aaUCGGAGC-UGGCAGuu-GCGGCGGUg -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 19361 | 0.73 | 0.382538 |
Target: 5'- -gGGCC-CGauagcgauaGCCGUCGACGCCGUCGa -3' miRNA: 3'- aaUCGGaGC---------UGGCAGUUGCGGCGGUg -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 79970 | 0.73 | 0.374263 |
Target: 5'- gUAGCCgagauggcgggCGGCCucuUCGACGCUGCCGCu -3' miRNA: 3'- aAUCGGa----------GCUGGc--AGUUGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 15822 | 0.73 | 0.374263 |
Target: 5'- -cAGCgUCGucgugaccGCCGcCGACGCUGCCGCa -3' miRNA: 3'- aaUCGgAGC--------UGGCaGUUGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 12677 | 1.06 | 0.002423 |
Target: 5'- uUUAGCCUCGACCGUCAACGCCGCCACc -3' miRNA: 3'- -AAUCGGAGCUGGCAGUUGCGGCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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