miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8492 5' -51 NC_002169.1 + 82521 0.66 0.991454
Target:  5'- aACACcgCCaccauaaCAUUCGACGAucu-GGCCg -3'
miRNA:   3'- -UGUGa-GGg------GUAAGCUGUUucauCCGG- -5'
8492 5' -51 NC_002169.1 + 51138 0.66 0.990208
Target:  5'- aACGCggCgCCAaagUCGAUAGAGgcGGCg -3'
miRNA:   3'- -UGUGa-GgGGUa--AGCUGUUUCauCCGg -5'
8492 5' -51 NC_002169.1 + 36145 0.66 0.988823
Target:  5'- cGCAUUCgCCcgUCu-CAAAGUuuGGCCg -3'
miRNA:   3'- -UGUGAGgGGuaAGcuGUUUCAu-CCGG- -5'
8492 5' -51 NC_002169.1 + 61062 0.66 0.988823
Target:  5'- cAUGCUUUgCGaUCGACAAAGUugcucguGGCCu -3'
miRNA:   3'- -UGUGAGGgGUaAGCUGUUUCAu------CCGG- -5'
8492 5' -51 NC_002169.1 + 95266 0.66 0.987291
Target:  5'- gACACUCCag--UCGGCGuuGUcgacGGGCUg -3'
miRNA:   3'- -UGUGAGGgguaAGCUGUuuCA----UCCGG- -5'
8492 5' -51 NC_002169.1 + 43867 0.67 0.981714
Target:  5'- cACACUCCCa--UCGAU--GGUAGGg- -3'
miRNA:   3'- -UGUGAGGGguaAGCUGuuUCAUCCgg -5'
8492 5' -51 NC_002169.1 + 21591 0.77 0.587492
Target:  5'- gACAgUUCCCcgUCGACAAGGUgccGGcGCCg -3'
miRNA:   3'- -UGUgAGGGGuaAGCUGUUUCA---UC-CGG- -5'
8492 5' -51 NC_002169.1 + 21720 1.13 0.00425
Target:  5'- uACACUCCCCAUUCGACAAAGUAGGCCg -3'
miRNA:   3'- -UGUGAGGGGUAAGCUGUUUCAUCCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.