miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8493	5'	-58.4	NC_002169.1	+	120912	0.66	0.79429
	Target:  5'- cGUUUUGcugCCGUgGCUgCUGCucaucCUCCGCCu -3' miRNA:   3'- -CGGAGCa--GGCA-CGA-GACGu----GAGGCGG- -5'
8493	5'	-58.4	NC_002169.1	+	124416	0.68	0.709377
	Target:  5'- -gCUCGUCg--GCUCUGCGCUagCGUCg -3' miRNA:   3'- cgGAGCAGgcaCGAGACGUGAg-GCGG- -5'
8493	5'	-58.4	NC_002169.1	+	46611	0.68	0.669603
	Target:  5'- cGCCgguUCGUCgGUcgagguagcgacGCUcCUGCAUaCCGCCa -3' miRNA:   3'- -CGG---AGCAGgCA------------CGA-GACGUGaGGCGG- -5'
8493	5'	-58.4	NC_002169.1	+	79725	0.69	0.609211
	Target:  5'- aGCCUCGUUCGU-CUauaGCGUUCUGCCg -3' miRNA:   3'- -CGGAGCAGGCAcGAga-CGUGAGGCGG- -5'
8493	5'	-58.4	NC_002169.1	+	88921	0.72	0.445527
	Target:  5'- -gCUCGUCUGUGCcgaCUGUAUUUCGUCg -3' miRNA:   3'- cgGAGCAGGCACGa--GACGUGAGGCGG- -5'
8493	5'	-58.4	NC_002169.1	+	35472	0.76	0.295605
	Target:  5'- cGCCUaacuuugacUGUaCCGUGCUCUGCGauaaucCCGCCg -3' miRNA:   3'- -CGGA---------GCA-GGCACGAGACGUga----GGCGG- -5'
8493	5'	-58.4	NC_002169.1	+	28192	1.13	0.000942
	Target:  5'- cGCCUCGUCCGUGCUCUGCACUCCGCCc -3' miRNA:   3'- -CGGAGCAGGCACGAGACGUGAGGCGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home