miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8494 3' -51.4 NC_002169.1 + 109259 0.69 0.913494
Target:  5'- -aCAGAGgaaaaacuuuuUGCCCGCCACCGucauuUCGCCGUg -3'
miRNA:   3'- caGUUUU-----------AUGGGUGGUGGU-----GGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 60200 0.7 0.893643
Target:  5'- gGUCG--GUGCCCAUCGCCAaguaCACUGUg -3'
miRNA:   3'- -CAGUuuUAUGGGUGGUGGUg---GUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 125090 0.7 0.871497
Target:  5'- uGUCGccg---CCGCCGCCGCCGCCGc -3'
miRNA:   3'- -CAGUuuuaugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 121917 0.7 0.871497
Target:  5'- aUCAuc--ACCaaCACCACCACCACCu- -3'
miRNA:   3'- cAGUuuuaUGG--GUGGUGGUGGUGGua -5'
8494 3' -51.4 NC_002169.1 + 1486 0.71 0.855526
Target:  5'- ---------gCCGCCGCCGCCGCCGUc -3'
miRNA:   3'- caguuuuaugGGUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 45933 0.71 0.838654
Target:  5'- cGUCGu----CCggCACCGCCGCCGCCAg -3'
miRNA:   3'- -CAGUuuuauGG--GUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 8894 0.71 0.820943
Target:  5'- uUCAGccGAUGCCCGugcCCACCGCCGucCCAg -3'
miRNA:   3'- cAGUU--UUAUGGGU---GGUGGUGGU--GGUa -5'
8494 3' -51.4 NC_002169.1 + 102900 0.72 0.763531
Target:  5'- cGUCGuuGUccucguCgCCGCCGCCGCCGCCGg -3'
miRNA:   3'- -CAGUuuUAu-----G-GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 1702 0.73 0.753446
Target:  5'- ---------gCCGCCACCGCCACCAa -3'
miRNA:   3'- caguuuuaugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 6214 0.74 0.701444
Target:  5'- aUCGAcgcuGUAgUCGCCGCCGCCGCCGc -3'
miRNA:   3'- cAGUUu---UAUgGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 18218 0.74 0.701444
Target:  5'- cGUCAAAGUccacgucgauaACCCAUUcacgGCCGCCGCCGUc -3'
miRNA:   3'- -CAGUUUUA-----------UGGGUGG----UGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 4290 0.74 0.658602
Target:  5'- -cCAGuuucaCCGCCGCCACCACCAc -3'
miRNA:   3'- caGUUuuaugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 1726 0.75 0.626185
Target:  5'- -aCAAucuUACgCGCCGCCGCCACCGc -3'
miRNA:   3'- caGUUuu-AUGgGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 1630 0.75 0.615377
Target:  5'- cGUUGAAAccGCacugCCACCACCACCACCAc -3'
miRNA:   3'- -CAGUUUUa-UG----GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 1518 0.75 0.604584
Target:  5'- -gCAuuuAUACcaCCACCACCACCACCGc -3'
miRNA:   3'- caGUuu-UAUG--GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 108885 0.76 0.561719
Target:  5'- cGUCGucGU-CgCCGCCGCCGCCGCCAc -3'
miRNA:   3'- -CAGUuuUAuG-GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 15156 0.77 0.519723
Target:  5'- -aUAAAuguUugCCGCCGCCACCGCCGc -3'
miRNA:   3'- caGUUUu--AugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 85658 0.78 0.489053
Target:  5'- uUgAAGAUGCCCACCG-CACCGCCGa -3'
miRNA:   3'- cAgUUUUAUGGGUGGUgGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 128119 0.8 0.359149
Target:  5'- aUCAAAAUuacgACgCCGCCGCCGCCGCCGc -3'
miRNA:   3'- cAGUUUUA----UG-GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 122646 0.82 0.303863
Target:  5'- --aGAAAUAUaCCACCACCACCACCAc -3'
miRNA:   3'- cagUUUUAUG-GGUGGUGGUGGUGGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.