miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8495 5' -59.8 NC_002169.1 + 28579 0.66 0.779853
Target:  5'- -aCGCGCgCGcacaaaACGCCUAC-UGCGCa- -3'
miRNA:   3'- ggGCGCGaGC------UGCGGAUGcACGCGcu -5'
8495 5' -59.8 NC_002169.1 + 22311 0.66 0.76167
Target:  5'- gCCCGCGCUCacUGCCgaagucaggGCGUaauaucgguugGUGCGGg -3'
miRNA:   3'- -GGGCGCGAGcuGCGGa--------UGCA-----------CGCGCU- -5'
8495 5' -59.8 NC_002169.1 + 22118 0.66 0.759827
Target:  5'- -aCGCGCUCGGCGCCcgcaccaaccgauauUACGcccugacuucggcagUgaGCGCGGg -3'
miRNA:   3'- ggGCGCGAGCUGCGG---------------AUGC---------------A--CGCGCU- -5'
8495 5' -59.8 NC_002169.1 + 58974 0.66 0.743056
Target:  5'- aUCUGCGC--GACaGCCUGCGcGCGCu- -3'
miRNA:   3'- -GGGCGCGagCUG-CGGAUGCaCGCGcu -5'
8495 5' -59.8 NC_002169.1 + 56754 0.66 0.733609
Target:  5'- gCCCGCGUuuacgagaUCGGCGUCgAUGUGCuguuCGAc -3'
miRNA:   3'- -GGGCGCG--------AGCUGCGGaUGCACGc---GCU- -5'
8495 5' -59.8 NC_002169.1 + 78032 0.67 0.695078
Target:  5'- gCCCGacgaaCGCUuCGACGCgaccucgaaUACGUGCGUGc -3'
miRNA:   3'- -GGGC-----GCGA-GCUGCGg--------AUGCACGCGCu -5'
8495 5' -59.8 NC_002169.1 + 5483 0.67 0.695078
Target:  5'- -gUGUGUUCGACGCCguuCGUGCaCGu -3'
miRNA:   3'- ggGCGCGAGCUGCGGau-GCACGcGCu -5'
8495 5' -59.8 NC_002169.1 + 22387 0.67 0.675484
Target:  5'- aUUGCGCUCGGCGUCgccaugUACG-GcCGCGGa -3'
miRNA:   3'- gGGCGCGAGCUGCGG------AUGCaC-GCGCU- -5'
8495 5' -59.8 NC_002169.1 + 124251 0.68 0.653779
Target:  5'- --aGCGCUCGACGCUagcgcagagccgACGaGCGUGAc -3'
miRNA:   3'- gggCGCGAGCUGCGGa-----------UGCaCGCGCU- -5'
8495 5' -59.8 NC_002169.1 + 57938 0.69 0.596384
Target:  5'- uUCGCGUUCGAaauguccgaCGCCgACGUGCaCGAc -3'
miRNA:   3'- gGGCGCGAGCU---------GCGGaUGCACGcGCU- -5'
8495 5' -59.8 NC_002169.1 + 48139 0.73 0.354986
Target:  5'- aCCGCcgUCGGCGCCguCGUGUGCGAc -3'
miRNA:   3'- gGGCGcgAGCUGCGGauGCACGCGCU- -5'
8495 5' -59.8 NC_002169.1 + 35002 1.1 0.00114
Target:  5'- cCCCGCGCUCGACGCCUACGUGCGCGAa -3'
miRNA:   3'- -GGGCGCGAGCUGCGGAUGCACGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.