Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8496 | 3' | -58 | NC_002169.1 | + | 37935 | 0.66 | 0.854352 |
Target: 5'- aCGGGAaaGCGgCCGCUGCgGUagacuUGGGg -3' miRNA: 3'- aGCUUUgcUGCgGGCGACGgCA-----GCCC- -5' |
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8496 | 3' | -58 | NC_002169.1 | + | 33140 | 0.66 | 0.857385 |
Target: 5'- gUCGAGACGcguggGCGCUgaUGUUGUuaagagucucuccauCGUCGGGa -3' miRNA: 3'- -AGCUUUGC-----UGCGG--GCGACG---------------GCAGCCC- -5' |
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8496 | 3' | -58 | NC_002169.1 | + | 25983 | 0.66 | 0.861875 |
Target: 5'- cCGGucGGCGGCGCCgGCUGCgcauagauUGUgCGGa -3' miRNA: 3'- aGCU--UUGCUGCGGgCGACG--------GCA-GCCc -5' |
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8496 | 3' | -58 | NC_002169.1 | + | 36003 | 1.09 | 0.001946 |
Target: 5'- cUCGAAACGACGCCCGCUGCCGUCGGGc -3' miRNA: 3'- -AGCUUUGCUGCGGGCGACGGCAGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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