miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
850 3' -58.3 NC_000898.1 + 2802 0.66 0.825091
Target:  5'- -aGGGGACGGACAGaGcGGAgaggCG-CGGg -3'
miRNA:   3'- gaCCCCUGUCUGUCcC-CCUa---GCuGCU- -5'
850 3' -58.3 NC_000898.1 + 155970 0.66 0.825091
Target:  5'- -aGGGGACGGACAGaGcGGAgaggCG-CGGg -3'
miRNA:   3'- gaCCCCUGUCUGUCcC-CCUa---GCuGCU- -5'
850 3' -58.3 NC_000898.1 + 2754 0.67 0.808254
Target:  5'- -cGGGcGACGGGCAGGGcGGG-C-ACGGa -3'
miRNA:   3'- gaCCC-CUGUCUGUCCC-CCUaGcUGCU- -5'
850 3' -58.3 NC_000898.1 + 155922 0.67 0.808254
Target:  5'- -cGGGcGACGGGCAGGGcGGG-C-ACGGa -3'
miRNA:   3'- gaCCC-CUGUCUGUCCC-CCUaGcUGCU- -5'
850 3' -58.3 NC_000898.1 + 3655 0.67 0.790812
Target:  5'- -cGGGGcggauCGGGCGGGGGGcgCagaGCGGa -3'
miRNA:   3'- gaCCCCu----GUCUGUCCCCCuaGc--UGCU- -5'
850 3' -58.3 NC_000898.1 + 156823 0.67 0.790812
Target:  5'- -cGGGGcggauCGGGCGGGGGGcgCagaGCGGa -3'
miRNA:   3'- gaCCCCu----GUCUGUCCCCCuaGc--UGCU- -5'
850 3' -58.3 NC_000898.1 + 153817 0.68 0.735502
Target:  5'- -cGGuGGCGGugGGGGGGAU-GugGGu -3'
miRNA:   3'- gaCCcCUGUCugUCCCCCUAgCugCU- -5'
850 3' -58.3 NC_000898.1 + 649 0.68 0.735502
Target:  5'- -cGGuGGCGGugGGGGGGAU-GugGGu -3'
miRNA:   3'- gaCCcCUGUCugUCCCCCUAgCugCU- -5'
850 3' -58.3 NC_000898.1 + 37826 0.69 0.696813
Target:  5'- -aGGGGACcGAuuguccuuCAGGGGGcgCGGgGAc -3'
miRNA:   3'- gaCCCCUGuCU--------GUCCCCCuaGCUgCU- -5'
850 3' -58.3 NC_000898.1 + 3867 0.7 0.607534
Target:  5'- -gGGGGAUGGAgggaGGGGGGAcCGAgGGg -3'
miRNA:   3'- gaCCCCUGUCUg---UCCCCCUaGCUgCU- -5'
850 3' -58.3 NC_000898.1 + 157035 0.7 0.607534
Target:  5'- -gGGGGAUGGAgggaGGGGGGAcCGAgGGg -3'
miRNA:   3'- gaCCCCUGUCUg---UCCCCCUaGCUgCU- -5'
850 3' -58.3 NC_000898.1 + 4631 0.76 0.325129
Target:  5'- -aGGGGAUgaGGGCGGGGGGAagGGCa- -3'
miRNA:   3'- gaCCCCUG--UCUGUCCCCCUagCUGcu -5'
850 3' -58.3 NC_000898.1 + 157799 0.76 0.325129
Target:  5'- -aGGGGAUgaGGGCGGGGGGAagGGCa- -3'
miRNA:   3'- gaCCCCUG--UCUGUCCCCCUagCUGcu -5'
850 3' -58.3 NC_000898.1 + 2591 1.08 0.002353
Target:  5'- cCUGGGGACAGACAGGGGGAUCGACGAc -3'
miRNA:   3'- -GACCCCUGUCUGUCCCCCUAGCUGCU- -5'
850 3' -58.3 NC_000898.1 + 155759 1.08 0.002353
Target:  5'- cCUGGGGACAGACAGGGGGAUCGACGAc -3'
miRNA:   3'- -GACCCCUGUCUGUCCCCCUAGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.