miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
850 5' -56.8 NC_000898.1 + 3812 0.66 0.911478
Target:  5'- cGUUCGggggaCU-UCCCGCCGacGCGcCUGCg -3'
miRNA:   3'- -CAAGCg----GAgAGGGCGGCa-UGCaGACG- -5'
850 5' -56.8 NC_000898.1 + 156980 0.66 0.911478
Target:  5'- cGUUCGggggaCU-UCCCGCCGacGCGcCUGCg -3'
miRNA:   3'- -CAAGCg----GAgAGGGCGGCa-UGCaGACG- -5'
850 5' -56.8 NC_000898.1 + 7075 0.66 0.906093
Target:  5'- --aCGCCUC-CgCUGCCuaucggaggcgacgGCGUCUGCg -3'
miRNA:   3'- caaGCGGAGaG-GGCGGca------------UGCAGACG- -5'
850 5' -56.8 NC_000898.1 + 160242 0.66 0.906093
Target:  5'- --aCGCCUC-CgCUGCCuaucggaggcgacgGCGUCUGCg -3'
miRNA:   3'- caaGCGGAGaG-GGCGGca------------UGCAGACG- -5'
850 5' -56.8 NC_000898.1 + 38643 0.66 0.886145
Target:  5'- --gCGUUUCUCCUGCCGUuuAC-UCUGa -3'
miRNA:   3'- caaGCGGAGAGGGCGGCA--UGcAGACg -5'
850 5' -56.8 NC_000898.1 + 111805 0.67 0.841727
Target:  5'- --aCGCCUUUCCCGggaUGUACcgagGUUUGCu -3'
miRNA:   3'- caaGCGGAGAGGGCg--GCAUG----CAGACG- -5'
850 5' -56.8 NC_000898.1 + 2554 1.12 0.001847
Target:  5'- uGUUCGCCUCUCCCGCCGUACGUCUGCg -3'
miRNA:   3'- -CAAGCGGAGAGGGCGGCAUGCAGACG- -5'
850 5' -56.8 NC_000898.1 + 155722 1.12 0.001847
Target:  5'- uGUUCGCCUCUCCCGCCGUACGUCUGCg -3'
miRNA:   3'- -CAAGCGGAGAGGGCGGCAUGCAGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.