miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8500 5' -43.5 NC_002169.1 + 21838 0.66 0.999999
Target:  5'- -gCCAGGCACcGUUUUUaGCg--CGUCg -3'
miRNA:   3'- aaGGUUUGUGuUAGAAA-CGaaaGCAG- -5'
8500 5' -43.5 NC_002169.1 + 111836 0.66 0.999999
Target:  5'- gUUCCAAAUACG--UUUUGUcaUCGUCc -3'
miRNA:   3'- -AAGGUUUGUGUuaGAAACGaaAGCAG- -5'
8500 5' -43.5 NC_002169.1 + 97784 0.66 0.999998
Target:  5'- cUCCAGcaccuuCACAucggcGUCcgUGUUUUCGUCg -3'
miRNA:   3'- aAGGUUu-----GUGU-----UAGaaACGAAAGCAG- -5'
8500 5' -43.5 NC_002169.1 + 82963 0.67 0.999993
Target:  5'- cUCC-AACGCGG-CUaUUGCUUUCGaUCg -3'
miRNA:   3'- aAGGuUUGUGUUaGA-AACGAAAGC-AG- -5'
8500 5' -43.5 NC_002169.1 + 77523 0.67 0.999993
Target:  5'- -gCCAaagggacacGACACAAUC-UUGUUUUCGcCg -3'
miRNA:   3'- aaGGU---------UUGUGUUAGaAACGAAAGCaG- -5'
8500 5' -43.5 NC_002169.1 + 36098 0.67 0.999993
Target:  5'- --aCGAGCGCAcacuGUCUUUGCaguaucgCGUCg -3'
miRNA:   3'- aagGUUUGUGU----UAGAAACGaaa----GCAG- -5'
8500 5' -43.5 NC_002169.1 + 41929 0.67 0.999993
Target:  5'- aUUUUAAACAUAgguguauaAUUUUUGCUUUcCGUCa -3'
miRNA:   3'- -AAGGUUUGUGU--------UAGAAACGAAA-GCAG- -5'
8500 5' -43.5 NC_002169.1 + 52661 0.67 0.99999
Target:  5'- aUUUUAGuACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGGUU-UGUGUUAgAAACGAAAGcAG- -5'
8500 5' -43.5 NC_002169.1 + 59828 0.67 0.999986
Target:  5'- gUUCAuguCGCGAUCgaugUUGCcguUUUCGUCg -3'
miRNA:   3'- aAGGUuu-GUGUUAGa---AACG---AAAGCAG- -5'
8500 5' -43.5 NC_002169.1 + 41049 0.68 0.999981
Target:  5'- -aUCGAAUACGGUCUUUGg---CGUCg -3'
miRNA:   3'- aaGGUUUGUGUUAGAAACgaaaGCAG- -5'
8500 5' -43.5 NC_002169.1 + 10714 0.68 0.999981
Target:  5'- aUUUUAGuACACAAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- -AAGGUU-UGUGUUAgAAACGAA----------AGCAG- -5'
8500 5' -43.5 NC_002169.1 + 11639 0.68 0.999981
Target:  5'- aUUCUAGuACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGGUU-UGUGUUAgAAACGAAAGcAG- -5'
8500 5' -43.5 NC_002169.1 + 1119 0.68 0.999973
Target:  5'- aUCUggGCACAAUUUccGCUgccgcCGUCg -3'
miRNA:   3'- aAGGuuUGUGUUAGAaaCGAaa---GCAG- -5'
8500 5' -43.5 NC_002169.1 + 42179 0.68 0.999973
Target:  5'- -aCUAAaauuguaguACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaGGUU---------UGUGUUAGAAACGAAAGcAG- -5'
8500 5' -43.5 NC_002169.1 + 91765 0.68 0.999973
Target:  5'- -aUCGGGCACuugccUCUUUGUcgUUUCGUCg -3'
miRNA:   3'- aaGGUUUGUGuu---AGAAACG--AAAGCAG- -5'
8500 5' -43.5 NC_002169.1 + 52979 0.68 0.999973
Target:  5'- aUUUUAGuACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGGUU-UGUGuUAGAAACGAAAGcAG- -5'
8500 5' -43.5 NC_002169.1 + 76040 0.7 0.999721
Target:  5'- -aCCGAACGCAccCUgaugcgGUUUUCGUCu -3'
miRNA:   3'- aaGGUUUGUGUuaGAaa----CGAAAGCAG- -5'
8500 5' -43.5 NC_002169.1 + 11012 0.7 0.999419
Target:  5'- gUUUAGuACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aAGGUU-UGUGUUAGAAACGAAAGcAG- -5'
8500 5' -43.5 NC_002169.1 + 42254 0.71 0.999269
Target:  5'- uUUUUAGuACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGGUU-UGUGUUAGAAACGAAAGcAG- -5'
8500 5' -43.5 NC_002169.1 + 104832 0.71 0.999087
Target:  5'- aUUUUAGuACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAGGUU-UGUGUUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.