miRNA: 3'- -AGGCGucGCAGUAUUCU--UUACaAC-CC- -5'
miRNA: 3'- aGGCG----------UCGCa----GUAUUCuu-UACAACCC- -5'
miRNA: 3'- -AggCGUCGCAGU--AUUCUuUACA---ACCc -5'
miRNA: 3'- aGGCGUCGCAg-----UAUUCUUU---ACaACCC- -5'
miRNA: 3'- -AGGCGUCGCAGUAUUCUUUACAACCC- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8502 | 3' | -47.5 | NC_002169.1 | + | 46180 | 0.67 | 0.998789 |
|
Target: 5'- uUCCGC--CGUCAUGAGAgcAAUGaUGcGGa -3' miRNA: 3'- -AGGCGucGCAGUAUUCU--UUACaAC-CC- -5' |
|||||||
| 8502 | 3' | -47.5 | NC_002169.1 | + | 134442 | 0.68 | 0.997432 |
|
Target: 5'- gCCGUgaauggccagAGCGacgcgCAUGAGcauGUGUUGGGg -3' miRNA: 3'- aGGCG----------UCGCa----GUAUUCuu-UACAACCC- -5' |
|||||||
| 8502 | 3' | -47.5 | NC_002169.1 | + | 79700 | 0.69 | 0.992144 |
|
Target: 5'- aUuuGCGGCGUCAauUGGGAcAUGUcguUGGu -3' miRNA: 3'- -AggCGUCGCAGU--AUUCUuUACA---ACCc -5' |
|||||||
| 8502 | 3' | -47.5 | NC_002169.1 | + | 125460 | 0.7 | 0.989614 |
|
Target: 5'- gCUGCAGCGUaaacugGUGGGAAAguuUGgUGGGg -3' miRNA: 3'- aGGCGUCGCAg-----UAUUCUUU---ACaACCC- -5' |
|||||||
| 8502 | 3' | -47.5 | NC_002169.1 | + | 46383 | 1.12 | 0.011358 |
|
Target: 5'- uUCCGCAGCGUCAUAAGAAAUGUUGGGu -3' miRNA: 3'- -AGGCGUCGCAGUAUUCUUUACAACCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home