miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8502 5' -51.7 NC_002169.1 + 61677 0.66 0.981714
Target:  5'- cGUCCGUGUCGUUGaguauuagaUCGgcGACGGUg -3'
miRNA:   3'- -CAGGCGUAGUAACgag------AGUa-CUGCCG- -5'
8502 5' -51.7 NC_002169.1 + 18296 0.66 0.977088
Target:  5'- uUCgGCGaaaaCAUUGCUCgcgUCAUGcacaGCGGCa -3'
miRNA:   3'- cAGgCGUa---GUAACGAG---AGUAC----UGCCG- -5'
8502 5' -51.7 NC_002169.1 + 56147 0.67 0.971654
Target:  5'- uUUCGCGUCAUUGCcgaCAcGcACGGCa -3'
miRNA:   3'- cAGGCGUAGUAACGagaGUaC-UGCCG- -5'
8502 5' -51.7 NC_002169.1 + 61090 0.67 0.95812
Target:  5'- --gCGCuggCAUUGCU-UCAUGAuCGGCa -3'
miRNA:   3'- cagGCGua-GUAACGAgAGUACU-GCCG- -5'
8502 5' -51.7 NC_002169.1 + 118553 0.67 0.95812
Target:  5'- -aCgGUGUCcgUGCUCUCGaccucGACGGUc -3'
miRNA:   3'- caGgCGUAGuaACGAGAGUa----CUGCCG- -5'
8502 5' -51.7 NC_002169.1 + 62629 0.69 0.930478
Target:  5'- aGUCUGCAUCGaaUGUUCUacaAUG-CGGCc -3'
miRNA:   3'- -CAGGCGUAGUa-ACGAGAg--UACuGCCG- -5'
8502 5' -51.7 NC_002169.1 + 55842 0.7 0.886528
Target:  5'- uGUCuCGCAUCAUgGaCUaUCcUGACGGCg -3'
miRNA:   3'- -CAG-GCGUAGUAaC-GAgAGuACUGCCG- -5'
8502 5' -51.7 NC_002169.1 + 39569 0.7 0.879244
Target:  5'- -aUCGCGcuuUCAacaaUUGUgCUCAUGGCGGCg -3'
miRNA:   3'- caGGCGU---AGU----AACGaGAGUACUGCCG- -5'
8502 5' -51.7 NC_002169.1 + 121074 0.72 0.807426
Target:  5'- -aCCGCAacucguccacccaagUCAccGCUCUCGUcaccGACGGCg -3'
miRNA:   3'- caGGCGU---------------AGUaaCGAGAGUA----CUGCCG- -5'
8502 5' -51.7 NC_002169.1 + 76196 0.73 0.765407
Target:  5'- -aCCGCAUCAgggUGCgUUCGguuagaGACGGCa -3'
miRNA:   3'- caGGCGUAGUa--ACGaGAGUa-----CUGCCG- -5'
8502 5' -51.7 NC_002169.1 + 46120 0.74 0.672666
Target:  5'- aGUCCGagaCGUCGgucgcGCUCUCGaucUGGCGGCg -3'
miRNA:   3'- -CAGGC---GUAGUaa---CGAGAGU---ACUGCCG- -5'
8502 5' -51.7 NC_002169.1 + 46345 1.13 0.00347
Target:  5'- uGUCCGCAUCAUUGCUCUCAUGACGGCg -3'
miRNA:   3'- -CAGGCGUAGUAACGAGAGUACUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.