miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8503 3' -51.4 NC_002169.1 + 27116 0.66 0.988444
Target:  5'- gACGgccaagauUCGGgCGGCGGACACcgccgaacccGUGGUCa -3'
miRNA:   3'- gUGC--------AGCCgGCCGCUUGUGa---------UAUUAG- -5'
8503 3' -51.4 NC_002169.1 + 49020 0.66 0.988444
Target:  5'- aAUGUCGGUCaaagagaguGGCGAagACACguUGAUCg -3'
miRNA:   3'- gUGCAGCCGG---------CCGCU--UGUGauAUUAG- -5'
8503 3' -51.4 NC_002169.1 + 111673 0.66 0.988444
Target:  5'- -uCGUCGacGCUGGCGAugGCcGUGAa- -3'
miRNA:   3'- guGCAGC--CGGCCGCUugUGaUAUUag -5'
8503 3' -51.4 NC_002169.1 + 45649 0.66 0.986879
Target:  5'- -gUGUCGaGCuCGGCGAGCAauCUGgugaAAUCg -3'
miRNA:   3'- guGCAGC-CG-GCCGCUUGU--GAUa---UUAG- -5'
8503 3' -51.4 NC_002169.1 + 58803 0.66 0.986547
Target:  5'- aACGUC-GUCGGUGAGCGCgcgcaggcuGUCg -3'
miRNA:   3'- gUGCAGcCGGCCGCUUGUGauau-----UAG- -5'
8503 3' -51.4 NC_002169.1 + 122474 0.66 0.985155
Target:  5'- gUAUGUCGGCauagugguggUGGUGGugGCUAUAuuUCu -3'
miRNA:   3'- -GUGCAGCCG----------GCCGCUugUGAUAUu-AG- -5'
8503 3' -51.4 NC_002169.1 + 125173 0.66 0.984605
Target:  5'- -uUGUCGGCgguuggggcaguauCGGCGAGgGCcgcuUGUAAUCa -3'
miRNA:   3'- guGCAGCCG--------------GCCGCUUgUG----AUAUUAG- -5'
8503 3' -51.4 NC_002169.1 + 133967 0.67 0.978705
Target:  5'- aACGUCGaaaCCGGCGGGCcguacauGCUAUacaagGAUCa -3'
miRNA:   3'- gUGCAGCc--GGCCGCUUG-------UGAUA-----UUAG- -5'
8503 3' -51.4 NC_002169.1 + 77750 0.67 0.976493
Target:  5'- aCGCGUC-GUCGGCGAcgcgcgGCACgcgAUGGUg -3'
miRNA:   3'- -GUGCAGcCGGCCGCU------UGUGa--UAUUAg -5'
8503 3' -51.4 NC_002169.1 + 22368 0.67 0.973843
Target:  5'- gCACGUgcCGGCCGGaaaGAuuGCGCUcgGcGUCg -3'
miRNA:   3'- -GUGCA--GCCGGCCg--CU--UGUGAuaU-UAG- -5'
8503 3' -51.4 NC_002169.1 + 102095 0.67 0.973843
Target:  5'- gACG-CGGCCGGaGAGCGCaac-GUCg -3'
miRNA:   3'- gUGCaGCCGGCCgCUUGUGauauUAG- -5'
8503 3' -51.4 NC_002169.1 + 30860 0.67 0.970982
Target:  5'- aCACGUUGGCCGcauaCGAAUAUUu--AUCg -3'
miRNA:   3'- -GUGCAGCCGGCc---GCUUGUGAuauUAG- -5'
8503 3' -51.4 NC_002169.1 + 26115 0.67 0.967903
Target:  5'- uGCGUgcGCCGGCGAucaacuauACACUAUAc-- -3'
miRNA:   3'- gUGCAgcCGGCCGCU--------UGUGAUAUuag -5'
8503 3' -51.4 NC_002169.1 + 70702 0.68 0.9646
Target:  5'- gACGUCGucGUCGGCGGGC-UUGUcGUCg -3'
miRNA:   3'- gUGCAGC--CGGCCGCUUGuGAUAuUAG- -5'
8503 3' -51.4 NC_002169.1 + 1681 0.68 0.961065
Target:  5'- gACGUCGG-UGGCGAcgGCGCcaggagcgAUAAUCu -3'
miRNA:   3'- gUGCAGCCgGCCGCU--UGUGa-------UAUUAG- -5'
8503 3' -51.4 NC_002169.1 + 66307 0.68 0.961065
Target:  5'- uGCGuUCGcGCCGGCGAcUACUAcuAUUg -3'
miRNA:   3'- gUGC-AGC-CGGCCGCUuGUGAUauUAG- -5'
8503 3' -51.4 NC_002169.1 + 54404 0.69 0.943105
Target:  5'- -uCGUCGGUgaaacagaUGGCGGGCGCUuguagaugaaacaaAUGAUCa -3'
miRNA:   3'- guGCAGCCG--------GCCGCUUGUGA--------------UAUUAG- -5'
8503 3' -51.4 NC_002169.1 + 26206 0.69 0.934724
Target:  5'- gACGUC-GCCGGCGAAgGCUu----- -3'
miRNA:   3'- gUGCAGcCGGCCGCUUgUGAuauuag -5'
8503 3' -51.4 NC_002169.1 + 9303 0.69 0.923911
Target:  5'- -gUGUCGGCaaaGGUGAACACc--AAUCg -3'
miRNA:   3'- guGCAGCCGg--CCGCUUGUGauaUUAG- -5'
8503 3' -51.4 NC_002169.1 + 59242 0.71 0.878043
Target:  5'- aACGUUGuGCCGGCGGACG-UGgcGUCc -3'
miRNA:   3'- gUGCAGC-CGGCCGCUUGUgAUauUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.