miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8503 5' -57.1 NC_002169.1 + 25688 0.68 0.754652
Target:  5'- aGCG---ACGGCGaaccgCCgGGCGUCGCCg -3'
miRNA:   3'- -CGUuagUGCCGCga---GGgUUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 103915 0.68 0.754652
Target:  5'- -gGAUCACGGCugcguucucGUUUCCAcCGCUGCa -3'
miRNA:   3'- cgUUAGUGCCG---------CGAGGGUuGCGGCGg -5'
8503 5' -57.1 NC_002169.1 + 6222 0.68 0.74507
Target:  5'- uGUAGUCGCcGcCGC-CgCCGcCGCCGCCg -3'
miRNA:   3'- -CGUUAGUGcC-GCGaG-GGUuGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 62044 0.68 0.739273
Target:  5'- gGCGGagGCGuuGCUUCUucgagucgacgaaaaGACGCCGCCg -3'
miRNA:   3'- -CGUUagUGCcgCGAGGG---------------UUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 34675 0.68 0.73539
Target:  5'- -gAGUCAauauCGGCGa---CGGCGCCGCCg -3'
miRNA:   3'- cgUUAGU----GCCGCgaggGUUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 21468 0.68 0.73539
Target:  5'- cCGA-CACGaGCGgaUCCCAccugGCGCCGCUc -3'
miRNA:   3'- cGUUaGUGC-CGCg-AGGGU----UGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 1117 0.68 0.73539
Target:  5'- -uGAUCugGGCacaauuuccGCUgCCGcCGUCGCCg -3'
miRNA:   3'- cgUUAGugCCG---------CGAgGGUuGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 48346 0.68 0.731492
Target:  5'- uGCAcgaACGGCGCUCUagacauugacuuggCAAaccgucaguucacCGCCGCCg -3'
miRNA:   3'- -CGUuagUGCCGCGAGG--------------GUU-------------GCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 97078 0.69 0.715772
Target:  5'- uGCGGUCgacgcugccgACGGUGUcgaCGACGCUGCCg -3'
miRNA:   3'- -CGUUAG----------UGCCGCGaggGUUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 117690 0.69 0.715772
Target:  5'- -aGAUgCGCGcCGCUCCCGuCGUCGUCg -3'
miRNA:   3'- cgUUA-GUGCcGCGAGGGUuGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 19090 0.69 0.68584
Target:  5'- aGUAGggCACGuuGUUCUCGACGCCGUa -3'
miRNA:   3'- -CGUUa-GUGCcgCGAGGGUUGCGGCGg -5'
8503 5' -57.1 NC_002169.1 + 77633 0.69 0.675763
Target:  5'- cGCAGUCGuuGCGCaauucgcaCUCGACGCCGUUa -3'
miRNA:   3'- -CGUUAGUgcCGCGa-------GGGUUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 63139 0.69 0.675763
Target:  5'- cGCAAgCGCcGCaGCUCUaGACGCCGCUc -3'
miRNA:   3'- -CGUUaGUGcCG-CGAGGgUUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 89245 0.7 0.66565
Target:  5'- -----gACGGCGUUUUCGACGuCCGCUa -3'
miRNA:   3'- cguuagUGCCGCGAGGGUUGC-GGCGG- -5'
8503 5' -57.1 NC_002169.1 + 35872 0.7 0.655511
Target:  5'- uGCGAUCAauGUGCUgCCGuC-CCGCCa -3'
miRNA:   3'- -CGUUAGUgcCGCGAgGGUuGcGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 51311 0.7 0.645354
Target:  5'- -gAGUUugGGCGCcgCCUcuaucgacuuuGGCGCCGCg -3'
miRNA:   3'- cgUUAGugCCGCGa-GGG-----------UUGCGGCGg -5'
8503 5' -57.1 NC_002169.1 + 109483 0.7 0.635186
Target:  5'- -aGAUCAUGGCGCUgCUuACGCC-CUa -3'
miRNA:   3'- cgUUAGUGCCGCGAgGGuUGCGGcGG- -5'
8503 5' -57.1 NC_002169.1 + 39425 0.7 0.635186
Target:  5'- gGCGucGUCgACGGUGCacUCaCCGACGCCuCCa -3'
miRNA:   3'- -CGU--UAG-UGCCGCG--AG-GGUUGCGGcGG- -5'
8503 5' -57.1 NC_002169.1 + 25857 0.7 0.625016
Target:  5'- cGCGuUgGCGGCGacgCCCGGCgGuuGCCg -3'
miRNA:   3'- -CGUuAgUGCCGCga-GGGUUG-CggCGG- -5'
8503 5' -57.1 NC_002169.1 + 79959 0.7 0.614851
Target:  5'- gGCGG--GCGGC-CUCuUCGACGCUGCCg -3'
miRNA:   3'- -CGUUagUGCCGcGAG-GGUUGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.