Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8504 | 5' | -48.4 | NC_002169.1 | + | 91326 | 0.66 | 0.998712 |
Target: 5'- uGUCUACGGCUUCGa---GAUCGuAACGu -3' miRNA: 3'- -CAGAUGCUGAGGCaacgCUAGU-UUGU- -5' |
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8504 | 5' | -48.4 | NC_002169.1 | + | 418 | 0.67 | 0.996788 |
Target: 5'- ---cACGcuCUCCGUUGCGAUCccGACu -3' miRNA: 3'- cagaUGCu-GAGGCAACGCUAGu-UUGu -5' |
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8504 | 5' | -48.4 | NC_002169.1 | + | 48085 | 0.71 | 0.962172 |
Target: 5'- -aCU-CGACUCCcUUGCGuGUCGGACAg -3' miRNA: 3'- caGAuGCUGAGGcAACGC-UAGUUUGU- -5' |
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8504 | 5' | -48.4 | NC_002169.1 | + | 111815 | 0.72 | 0.935603 |
Target: 5'- cGUCgACGAUucugCCGUUGCGAUCGcgucguuuAGCAa -3' miRNA: 3'- -CAGaUGCUGa---GGCAACGCUAGU--------UUGU- -5' |
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8504 | 5' | -48.4 | NC_002169.1 | + | 27955 | 0.72 | 0.935603 |
Target: 5'- ---gACGACUCCGUUggugGCGuuGUCGAGCAc -3' miRNA: 3'- cagaUGCUGAGGCAA----CGC--UAGUUUGU- -5' |
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8504 | 5' | -48.4 | NC_002169.1 | + | 48211 | 1.09 | 0.013348 |
Target: 5'- aGUCUACGACUCCGUUGCGAUCAAACAc -3' miRNA: 3'- -CAGAUGCUGAGGCAACGCUAGUUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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