Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8505 | 5' | -44.2 | NC_002169.1 | + | 42350 | 0.87 | 0.521315 |
Target: 5'- cUCGAUGAAAGCAAAgAUCaUGUACUAc -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 119354 | 0.87 | 0.532216 |
Target: 5'- uUCGAUaAAAGCAAAgAUCGUGUACUAa -3' miRNA: 3'- -AGCUAcUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 105569 | 0.88 | 0.468255 |
Target: 5'- -gGAUGAAAGCAAAgAUCGUGUAUUAa -3' miRNA: 3'- agCUACUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 104997 | 0.88 | 0.478654 |
Target: 5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 53204 | 0.88 | 0.478654 |
Target: 5'- gUCGAUGAAAGCAAAgAUCaUGUACUAg -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 42419 | 0.88 | 0.478654 |
Target: 5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 119452 | 0.88 | 0.478654 |
Target: 5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 10849 | 0.88 | 0.478654 |
Target: 5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 11732 | 0.89 | 0.418109 |
Target: 5'- gUCGAUGAAAGCAAAgAUCGaGUACUAg -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGCaCAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 119762 | 0.9 | 0.371368 |
Target: 5'- uUCGAcGAAAGCAAAgAUCGUGUACUGa -3' miRNA: 3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 11315 | 0.9 | 0.362458 |
Target: 5'- uUCGAcGAAAGCAAAgAUCGUGUACUAu -3' miRNA: 3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 42031 | 0.91 | 0.32832 |
Target: 5'- cUCGAUGAAAGCAAAgAUCGUGUAUg- -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGCACAUGau -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 11445 | 0.91 | 0.353696 |
Target: 5'- gUCGAUGAAAGCAAAgAUUGUGUAUUAa -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 105236 | 0.91 | 0.345086 |
Target: 5'- gUCGAcGAAAGCAAAgAUCGUGUACUAa -3' miRNA: 3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 52815 | 0.92 | 0.312164 |
Target: 5'- cUCGAUGAAAGCAAAgAUgGUGUACUAa -3' miRNA: 3'- -AGCUACUUUCGUUUgUAgCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 42158 | 0.93 | 0.274439 |
Target: 5'- -aGAUGAAAGCAAAgAUCGUGUACUGa -3' miRNA: 3'- agCUACUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 105532 | 0.95 | 0.221796 |
Target: 5'- uUCGAUGAAAGCAAAgAUCGUGUAUUAc -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 11474 | 0.97 | 0.178002 |
Target: 5'- gUCGAUGAAAGCAAACAUCaUGUACUAg -3' miRNA: 3'- -AGCUACUUUCGUUUGUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 10551 | 0.98 | 0.154686 |
Target: 5'- -aGAUGAAAGCAAACAUUGUGUACUAa -3' miRNA: 3'- agCUACUUUCGUUUGUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 71797 | 1 | 0.119596 |
Target: 5'- cUCGAUGAAAGCAAAgAUCGUGUACUGa -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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