Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8505 | 5' | -44.2 | NC_002169.1 | + | 52932 | 0.75 | 0.974087 |
Target: 5'- cUCGAUGAAAGCAAAgAUUGaGUAUg- -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGCaCAUGau -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 105355 | 0.74 | 0.981804 |
Target: 5'- -gGAUGAAAGCAAACAUgaUGUACc- -3' miRNA: 3'- agCUACUUUCGUUUGUAgcACAUGau -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 53060 | 0.73 | 0.993058 |
Target: 5'- -gGAUGAAAGCAAAgAUgaUGUACUAa -3' miRNA: 3'- agCUACUUUCGUUUgUAgcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 105376 | 0.73 | 0.994057 |
Target: 5'- gUCGAcGAucuuggacaaAAGCAAAgAUCGUGUAUUAa -3' miRNA: 3'- -AGCUaCU----------UUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 104927 | 0.72 | 0.995709 |
Target: 5'- gUCGAcGAAAGCAAAgAUCaUGUAUUGa -3' miRNA: 3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 11196 | 0.72 | 0.996381 |
Target: 5'- -gGAcGAAAGCAAAgAUCGaGUACUAg -3' miRNA: 3'- agCUaCUUUCGUUUgUAGCaCAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 11332 | 0.71 | 0.9979 |
Target: 5'- gUCGAcGAAAGCAAAgAUCGUGcauuuCUGc -3' miRNA: 3'- -AGCUaCUUUCGUUUgUAGCACau---GAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 71670 | 0.71 | 0.998843 |
Target: 5'- -gGAcGAAAGCAAAgAUCaUGUACUAg -3' miRNA: 3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 52698 | 0.71 | 0.998843 |
Target: 5'- -gGAcGAAAGCAAAgAUCaUGUACUAg -3' miRNA: 3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 41801 | 0.7 | 0.999399 |
Target: 5'- cUCGAUGAAcGCAAACAUUGaaUAUUGc -3' miRNA: 3'- -AGCUACUUuCGUUUGUAGCacAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 53156 | 0.7 | 0.999399 |
Target: 5'- -gGAcGAAAGCAAAgAUCaUGUACUGa -3' miRNA: 3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 105115 | 0.7 | 0.999399 |
Target: 5'- -gGAcGAAAGCAAAgAUCaUGUACUGa -3' miRNA: 3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 118888 | 0.69 | 0.999707 |
Target: 5'- aUCGAUGAGAGCcuguAgAUCGgccgugaauuguUGUGCUGa -3' miRNA: 3'- -AGCUACUUUCGuu--UgUAGC------------ACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 105130 | 0.68 | 0.999899 |
Target: 5'- ----cGAAAGCAAAgAUCaUGUACUAg -3' miRNA: 3'- agcuaCUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 95572 | 0.68 | 0.999944 |
Target: 5'- gUCGAUGAGA-CcGGCGUCGUGUuuUGa -3' miRNA: 3'- -AGCUACUUUcGuUUGUAGCACAugAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 97066 | 0.67 | 0.999978 |
Target: 5'- aUCGAcGAuc-CGAACGUUGUGUACa- -3' miRNA: 3'- -AGCUaCUuucGUUUGUAGCACAUGau -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 115806 | 0.67 | 0.999984 |
Target: 5'- aUGAucuUGGAGGCGGACAaggcgguguugUUGUGUGCg- -3' miRNA: 3'- aGCU---ACUUUCGUUUGU-----------AGCACAUGau -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 93450 | 0.67 | 0.999989 |
Target: 5'- gUCGAUGAAGGUcuGCAguaUGUGCa- -3' miRNA: 3'- -AGCUACUUUCGuuUGUagcACAUGau -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 10880 | 0.66 | 0.999992 |
Target: 5'- gUCGAaGAucuuggacgAAGCAAAgAUCGaGUACUAg -3' miRNA: 3'- -AGCUaCU---------UUCGUUUgUAGCaCAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 80401 | 0.66 | 0.999994 |
Target: 5'- aCGAUGGguuucguGAGC-GGCAUCGUGaGCa- -3' miRNA: 3'- aGCUACU-------UUCGuUUGUAGCACaUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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