miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8505 5' -44.2 NC_002169.1 + 104997 0.88 0.478654
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105115 0.7 0.999399
Target:  5'- -gGAcGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105130 0.68 0.999899
Target:  5'- ----cGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agcuaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105236 0.91 0.345086
Target:  5'- gUCGAcGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105255 1.01 0.106505
Target:  5'- uUCGAUGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105355 0.74 0.981804
Target:  5'- -gGAUGAAAGCAAACAUgaUGUACc- -3'
miRNA:   3'- agCUACUUUCGUUUGUAgcACAUGau -5'
8505 5' -44.2 NC_002169.1 + 105376 0.73 0.994057
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAgAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105441 0.77 0.937267
Target:  5'- uUCGAcGAAAGCAAAgAUUGUGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 105481 0.83 0.689378
Target:  5'- -gGAcGAAAGCAAACAUUGUGUACUu -3'
miRNA:   3'- agCUaCUUUCGUUUGUAGCACAUGAu -5'
8505 5' -44.2 NC_002169.1 + 105532 0.95 0.221796
Target:  5'- uUCGAUGAAAGCAAAgAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105569 0.88 0.468255
Target:  5'- -gGAUGAAAGCAAAgAUCGUGUAUUAa -3'
miRNA:   3'- agCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105660 0.82 0.744305
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACUGu -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 115806 0.67 0.999984
Target:  5'- aUGAucuUGGAGGCGGACAaggcgguguugUUGUGUGCg- -3'
miRNA:   3'- aGCU---ACUUUCGUUUGU-----------AGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 117283 0.66 0.999995
Target:  5'- uUUGAUGAGAuuccACAUCGUGUgGCUAu -3'
miRNA:   3'- -AGCUACUUUcguuUGUAGCACA-UGAU- -5'
8505 5' -44.2 NC_002169.1 + 118888 0.69 0.999707
Target:  5'- aUCGAUGAGAGCcuguAgAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUACUUUCGuu--UgUAGC------------ACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 119354 0.87 0.532216
Target:  5'- uUCGAUaAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUAcUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 119452 0.88 0.478654
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 119580 0.83 0.689378
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 119635 0.76 0.95636
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 119762 0.9 0.371368
Target:  5'- uUCGAcGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.