miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8505 5' -44.2 NC_002169.1 + 53204 0.88 0.478654
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 120199 0.83 0.689378
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105660 0.82 0.744305
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACUGu -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 42158 0.93 0.274439
Target:  5'- -aGAUGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- agCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 42419 0.88 0.478654
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10679 0.79 0.877385
Target:  5'- gUCGAUGAAAGCAAAgAUCGUuGUGg-- -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCA-CAUgau -5'
8505 5' -44.2 NC_002169.1 + 42031 0.91 0.32832
Target:  5'- cUCGAUGAAAGCAAAgAUCGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 53284 0.77 0.931773
Target:  5'- gUCGAcGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11732 0.89 0.418109
Target:  5'- gUCGAUGAAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCaCAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10978 1 0.123096
Target:  5'- cUCGAcGAAAGCAAACAUCGUGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUGUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 52942 0.76 0.95636
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 119580 0.83 0.689378
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11602 0.83 0.71161
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 52825 1.09 0.033323
Target:  5'- uUCGAUGAAAGCAAACAUCGUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUGUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10849 0.88 0.478654
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 97066 0.67 0.999978
Target:  5'- aUCGAcGAuc-CGAACGUUGUGUACa- -3'
miRNA:   3'- -AGCUaCUuucGUUUGUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 11068 0.78 0.913535
Target:  5'- uUCGAcGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11604 0.78 0.919906
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 115806 0.67 0.999984
Target:  5'- aUGAucuUGGAGGCGGACAaggcgguguugUUGUGUGCg- -3'
miRNA:   3'- aGCU---ACUUUCGUUUGU-----------AGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 93450 0.67 0.999989
Target:  5'- gUCGAUGAAGGUcuGCAguaUGUGCa- -3'
miRNA:   3'- -AGCUACUUUCGuuUGUagcACAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.