Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8506 | 3' | -43.2 | NC_002169.1 | + | 71637 | 0.79 | 0.924193 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCaUCg -3' miRNA: 3'- agaUCAUGUaCUAGAAACGAAAGcAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 119602 | 0.92 | 0.356681 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- agaUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 42188 | 0.92 | 0.365549 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- agAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 104769 | 0.92 | 0.374569 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- agaucAUGUACUAGAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 52784 | 0.9 | 0.441769 |
Target: 5'- --cGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 105501 | 0.9 | 0.441769 |
Target: 5'- --cAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 105091 | 0.85 | 0.706627 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUaCUAGAAACGAAAGcAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 11568 | 0.84 | 0.76112 |
Target: 5'- cUCUAGUACucGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGuaCUAGAAACGAAAGcAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 11173 | 0.82 | 0.831122 |
Target: 5'- ----aUGCAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- agaucAUGUaCUAGAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 11442 | 0.93 | 0.314638 |
Target: 5'- -aUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 10815 | 0.94 | 0.291265 |
Target: 5'- cUCUAGUACAcGAUgUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUCAUGUaCUAgAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 11034 | 0.95 | 0.276451 |
Target: 5'- cUCUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 53040 | 1.01 | 0.134622 |
Target: 5'- uUCUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 104956 | 1 | 0.142584 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUACUAGAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 119418 | 0.96 | 0.242057 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 120037 | 0.96 | 0.242057 |
Target: 5'- uUUUAGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 10935 | 0.95 | 0.269272 |
Target: 5'- cUUUGGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUaCUAGAAACGAAAGCAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 42255 | 0.95 | 0.276451 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 104833 | 0.95 | 0.276451 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUACUAGAAACGAAAGcAG- -5' |
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8506 | 3' | -43.2 | NC_002169.1 | + | 10707 | 0.95 | 0.276451 |
Target: 5'- cUCUAGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuaCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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