miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8507 3' -62 NC_002169.1 + 36697 0.66 0.642613
Target:  5'- -aUCGAGCCCGgCGAaucguacuGCaUGgCGUUGGa -3'
miRNA:   3'- uaAGCUCGGGCgGCU--------CG-GCgGCAGCC- -5'
8507 3' -62 NC_002169.1 + 22508 0.66 0.631782
Target:  5'- --aCGuGCUgGCCGAGCaauagcucuacggCGCgGUCGGc -3'
miRNA:   3'- uaaGCuCGGgCGGCUCG-------------GCGgCAGCC- -5'
8507 3' -62 NC_002169.1 + 36763 0.66 0.622921
Target:  5'- --aCGGGCguguggauccUCGCCGAaaGCC-CCGUCGGc -3'
miRNA:   3'- uaaGCUCG----------GGCGGCU--CGGcGGCAGCC- -5'
8507 3' -62 NC_002169.1 + 62060 0.66 0.613081
Target:  5'- cUUCGAGUCgaCGaaaaGAcGCCGCCGUCGa -3'
miRNA:   3'- uAAGCUCGG--GCgg--CU-CGGCGGCAGCc -5'
8507 3' -62 NC_002169.1 + 100462 0.67 0.593448
Target:  5'- -----cGCUCGCCGAGCUGCUGUa-- -3'
miRNA:   3'- uaagcuCGGGCGGCUCGGCGGCAgcc -5'
8507 3' -62 NC_002169.1 + 25847 0.67 0.583668
Target:  5'- --gCGAcGCCCGgCG-GuuGCCGUCGc -3'
miRNA:   3'- uaaGCU-CGGGCgGCuCggCGGCAGCc -5'
8507 3' -62 NC_002169.1 + 2961 0.67 0.57392
Target:  5'- uUUCGGGCgaguaauaGUCGAGCgUGCCGUCGa -3'
miRNA:   3'- uAAGCUCGgg------CGGCUCG-GCGGCAGCc -5'
8507 3' -62 NC_002169.1 + 15341 0.68 0.535366
Target:  5'- aAUUCGGG-CCGCUGGGC-GCCGUuCGa -3'
miRNA:   3'- -UAAGCUCgGGCGGCUCGgCGGCA-GCc -5'
8507 3' -62 NC_002169.1 + 43619 0.68 0.525864
Target:  5'- -cUCGGG-CCGCuCGGGCCuaaaGCCGUCa- -3'
miRNA:   3'- uaAGCUCgGGCG-GCUCGG----CGGCAGcc -5'
8507 3' -62 NC_002169.1 + 113584 0.68 0.516426
Target:  5'- -gUCGAcGCaauGCCGGGUCGCgGUUGGa -3'
miRNA:   3'- uaAGCU-CGgg-CGGCUCGGCGgCAGCC- -5'
8507 3' -62 NC_002169.1 + 59674 0.71 0.346474
Target:  5'- --gCGAGCgU-CCGAGUCGCCGUCGa -3'
miRNA:   3'- uaaGCUCGgGcGGCUCGGCGGCAGCc -5'
8507 3' -62 NC_002169.1 + 78138 1.07 0.001116
Target:  5'- uAUUCGAGCCCGCCGAGCCGCCGUCGGu -3'
miRNA:   3'- -UAAGCUCGGGCGGCUCGGCGGCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.