miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8507 5' -51.2 NC_002169.1 + 112383 0.66 0.984492
Target:  5'- aGGgCAGCGGCAUCaGGUCGgACUuuAUc -3'
miRNA:   3'- -UCgGUUGUCGUAG-CUAGCgUGGuuUA- -5'
8507 5' -51.2 NC_002169.1 + 79971 0.66 0.984492
Target:  5'- -aUCAACAGCGgcaacCGAUCGCACg---- -3'
miRNA:   3'- ucGGUUGUCGUa----GCUAGCGUGguuua -5'
8507 5' -51.2 NC_002169.1 + 39029 0.66 0.982493
Target:  5'- uGCCGGCAGCGUUaa--GgGCCAGGUa -3'
miRNA:   3'- uCGGUUGUCGUAGcuagCgUGGUUUA- -5'
8507 5' -51.2 NC_002169.1 + 17070 0.66 0.982493
Target:  5'- cGGCuCAACAGCggCGAcacaaCGCACuCAAAc -3'
miRNA:   3'- -UCG-GUUGUCGuaGCUa----GCGUG-GUUUa -5'
8507 5' -51.2 NC_002169.1 + 84554 0.66 0.980307
Target:  5'- uGgCGACAuCGUUGGUCGCaACCGAAUu -3'
miRNA:   3'- uCgGUUGUcGUAGCUAGCG-UGGUUUA- -5'
8507 5' -51.2 NC_002169.1 + 118729 0.66 0.980307
Target:  5'- cGGCCGaucuACAGgcucuCAUCGAUCgggucaacgGCGCCAAAa -3'
miRNA:   3'- -UCGGU----UGUC-----GUAGCUAG---------CGUGGUUUa -5'
8507 5' -51.2 NC_002169.1 + 57154 0.66 0.980307
Target:  5'- cAGCCGGCGGCGUCcaaaGCgGCCAc-- -3'
miRNA:   3'- -UCGGUUGUCGUAGcuagCG-UGGUuua -5'
8507 5' -51.2 NC_002169.1 + 47153 0.66 0.977923
Target:  5'- cGCuCGGCGGCGUUGGgaGCGCCGu-- -3'
miRNA:   3'- uCG-GUUGUCGUAGCUagCGUGGUuua -5'
8507 5' -51.2 NC_002169.1 + 24364 0.66 0.977923
Target:  5'- cGUCAugGGUGUacacguuggCGAUCGCGCCGu-- -3'
miRNA:   3'- uCGGUugUCGUA---------GCUAGCGUGGUuua -5'
8507 5' -51.2 NC_002169.1 + 85759 0.66 0.972527
Target:  5'- uGGCCGAUGGCAUCG-UCGUcgaaaagggGCgCAAAUu -3'
miRNA:   3'- -UCGGUUGUCGUAGCuAGCG---------UG-GUUUA- -5'
8507 5' -51.2 NC_002169.1 + 41692 0.67 0.969499
Target:  5'- cGCCAGaCAGCAUCGGgcaCGU-CCAAc- -3'
miRNA:   3'- uCGGUU-GUCGUAGCUa--GCGuGGUUua -5'
8507 5' -51.2 NC_002169.1 + 41271 0.67 0.966239
Target:  5'- cGGUCGAgAGCAcCGAUCcGCACUAu-- -3'
miRNA:   3'- -UCGGUUgUCGUaGCUAG-CGUGGUuua -5'
8507 5' -51.2 NC_002169.1 + 31005 0.67 0.966239
Target:  5'- cGGCCAAC-GUGUCGuGUCGCgACCGc-- -3'
miRNA:   3'- -UCGGUUGuCGUAGC-UAGCG-UGGUuua -5'
8507 5' -51.2 NC_002169.1 + 62088 0.67 0.955005
Target:  5'- cGCCAacGCAGCAuuguucUCGAUCuGUGCCGu-- -3'
miRNA:   3'- uCGGU--UGUCGU------AGCUAG-CGUGGUuua -5'
8507 5' -51.2 NC_002169.1 + 93350 0.67 0.955005
Target:  5'- --aCGACGGCAUCG-UCGuCACCAc-- -3'
miRNA:   3'- ucgGUUGUCGUAGCuAGC-GUGGUuua -5'
8507 5' -51.2 NC_002169.1 + 88930 0.67 0.955005
Target:  5'- uGCCGACuGUauuucGUCGA-CGUACCGAAUc -3'
miRNA:   3'- uCGGUUGuCG-----UAGCUaGCGUGGUUUA- -5'
8507 5' -51.2 NC_002169.1 + 21663 0.68 0.950757
Target:  5'- gAGgCGACGGCAUCaacGA-CGCGCUAAAa -3'
miRNA:   3'- -UCgGUUGUCGUAG---CUaGCGUGGUUUa -5'
8507 5' -51.2 NC_002169.1 + 30777 0.68 0.949876
Target:  5'- cGCCGACAGCGgauuguuuuuggCGAUgCGCAgCAAc- -3'
miRNA:   3'- uCGGUUGUCGUa-----------GCUA-GCGUgGUUua -5'
8507 5' -51.2 NC_002169.1 + 92605 0.68 0.946248
Target:  5'- gGGCC-ACAGCGUCGcgUGCGgucUCAAGa -3'
miRNA:   3'- -UCGGuUGUCGUAGCuaGCGU---GGUUUa -5'
8507 5' -51.2 NC_002169.1 + 36257 0.68 0.936439
Target:  5'- cGGgCAACGGCAUCGA-CGaACCGAc- -3'
miRNA:   3'- -UCgGUUGUCGUAGCUaGCgUGGUUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.