miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8508 5' -48.1 NC_002169.1 + 74967 0.66 0.998757
Target:  5'- -cGUAUGcuaucuguggccuUUUCGACGGCGACGguguuaACGAUg -3'
miRNA:   3'- uuCAUGC-------------AAAGUUGCUGCUGC------UGCUG- -5'
8508 5' -48.1 NC_002169.1 + 18378 0.67 0.998518
Target:  5'- --aUGgGUUaUCGACGugGACuuuGACGACa -3'
miRNA:   3'- uucAUgCAA-AGUUGCugCUG---CUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 120072 0.67 0.998518
Target:  5'- aGAGUuuaacUUCAACGACGAaGugGGCa -3'
miRNA:   3'- -UUCAugca-AAGUUGCUGCUgCugCUG- -5'
8508 5' -48.1 NC_002169.1 + 112613 0.67 0.997999
Target:  5'- cAAGUGCGUggCAAUGAuccuauuauugccguCGuCGAUGGCg -3'
miRNA:   3'- -UUCAUGCAaaGUUGCU---------------GCuGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 25080 0.67 0.997848
Target:  5'- uAGUGuCGauguugUUCAGCG-CGGCGGCGAg -3'
miRNA:   3'- uUCAU-GCa-----AAGUUGCuGCUGCUGCUg -5'
8508 5' -48.1 NC_002169.1 + 111223 0.67 0.997687
Target:  5'- --uUGCGUUUCAuuuuguuuccuuugAUGAuuuguaaCGACGACGGCg -3'
miRNA:   3'- uucAUGCAAAGU--------------UGCU-------GCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 44132 0.67 0.997427
Target:  5'- --uUAC-UUUCGACGACGACGuuCGAa -3'
miRNA:   3'- uucAUGcAAAGUUGCUGCUGCu-GCUg -5'
8508 5' -48.1 NC_002169.1 + 118950 0.67 0.997427
Target:  5'- ---gAUGguugUUUAACGGCGGCGGCGuCg -3'
miRNA:   3'- uucaUGCa---AAGUUGCUGCUGCUGCuG- -5'
8508 5' -48.1 NC_002169.1 + 32969 0.67 0.997427
Target:  5'- -cGUGgGUUUCGACGAa-ACGACG-Ca -3'
miRNA:   3'- uuCAUgCAAAGUUGCUgcUGCUGCuG- -5'
8508 5' -48.1 NC_002169.1 + 66918 0.67 0.997427
Target:  5'- -cGUugGUcUCGACGACGGCGcUGuCc -3'
miRNA:   3'- uuCAugCAaAGUUGCUGCUGCuGCuG- -5'
8508 5' -48.1 NC_002169.1 + 85060 0.67 0.997427
Target:  5'- -cGUACGUcUUCGuCGGCuuucaguuuGACGAUGACa -3'
miRNA:   3'- uuCAUGCA-AAGUuGCUG---------CUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 85574 0.67 0.997143
Target:  5'- cGAGUGCGcgcgUCGAauuugcgccccuuuuCGACGACGAUGcCa -3'
miRNA:   3'- -UUCAUGCaa--AGUU---------------GCUGCUGCUGCuG- -5'
8508 5' -48.1 NC_002169.1 + 95902 0.68 0.996379
Target:  5'- uGAGU-CGcauacUAAUGGCGACGACGAUa -3'
miRNA:   3'- -UUCAuGCaaa--GUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 56913 0.68 0.996379
Target:  5'- cAAGauCGUUUCGugcuucACGACGuucACGGCGACg -3'
miRNA:   3'- -UUCauGCAAAGU------UGCUGC---UGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 74914 0.68 0.996379
Target:  5'- ---gACGacaccaaCAACGAUGGCGACGACn -3'
miRNA:   3'- uucaUGCaaa----GUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 133800 0.68 0.996379
Target:  5'- cAAGUGCG--UCGACGuCGACGccaaGACa -3'
miRNA:   3'- -UUCAUGCaaAGUUGCuGCUGCug--CUG- -5'
8508 5' -48.1 NC_002169.1 + 9312 0.68 0.996379
Target:  5'- aAGGUGaacacCAaucGCGACGACGACGAUu -3'
miRNA:   3'- -UUCAUgcaaaGU---UGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 121318 0.68 0.996195
Target:  5'- -cGUGCGUcaaucuaccCAGCGACGAUgccguaggaagaaaGACGACg -3'
miRNA:   3'- uuCAUGCAaa-------GUUGCUGCUG--------------CUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 107711 0.68 0.995736
Target:  5'- uGGUGgGUUU-GGCGAUaGCGACGGCa -3'
miRNA:   3'- uUCAUgCAAAgUUGCUGcUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 54587 0.68 0.995736
Target:  5'- -cGUACGUgaUCAACuauuACGGCGACGuCa -3'
miRNA:   3'- uuCAUGCAa-AGUUGc---UGCUGCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.