miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8509 3' -50.9 NC_002169.1 + 6402 0.66 0.991336
Target:  5'- -uUGAGga-GGUUcaggcucGGCGGCGGCGGCGg -3'
miRNA:   3'- cuACUCacaCUAA-------CUGCUGCUGCCGU- -5'
8509 3' -50.9 NC_002169.1 + 64470 0.66 0.990208
Target:  5'- --aGGGUGUugucgaGAUcgaaGACGACGACGuGCGg -3'
miRNA:   3'- cuaCUCACA------CUAa---CUGCUGCUGC-CGU- -5'
8509 3' -50.9 NC_002169.1 + 71862 0.66 0.987291
Target:  5'- cGGUGuuUG-GAUUGACGGCGAaacgaucguaguCGGCc -3'
miRNA:   3'- -CUACucACaCUAACUGCUGCU------------GCCGu -5'
8509 3' -50.9 NC_002169.1 + 63447 0.67 0.982549
Target:  5'- --aGAGUGUGAUcacaaauucgUGACGAuCGAaagacagaugcgugcCGGCGa -3'
miRNA:   3'- cuaCUCACACUA----------ACUGCU-GCU---------------GCCGU- -5'
8509 3' -50.9 NC_002169.1 + 54941 0.67 0.979498
Target:  5'- aAUGAGUGUcacaacGACGACGACGaCAa -3'
miRNA:   3'- cUACUCACAcuaa--CUGCUGCUGCcGU- -5'
8509 3' -50.9 NC_002169.1 + 112574 0.67 0.977088
Target:  5'- uAUGGGUaGUuugcUGGCGACGACGGUc -3'
miRNA:   3'- cUACUCA-CAcua-ACUGCUGCUGCCGu -5'
8509 3' -50.9 NC_002169.1 + 107711 0.68 0.971654
Target:  5'- uGGUGGGU----UUGGCGauaGCGACGGCAu -3'
miRNA:   3'- -CUACUCAcacuAACUGC---UGCUGCCGU- -5'
8509 3' -50.9 NC_002169.1 + 93165 0.68 0.96535
Target:  5'- cGAUGAGgauaaUGAUaaUGAUGAUGAUGGUg -3'
miRNA:   3'- -CUACUCac---ACUA--ACUGCUGCUGCCGu -5'
8509 3' -50.9 NC_002169.1 + 1957 0.68 0.961853
Target:  5'- cGAUG-GUGUcGUUGucauCGACGugGGUAu -3'
miRNA:   3'- -CUACuCACAcUAACu---GCUGCugCCGU- -5'
8509 3' -50.9 NC_002169.1 + 95964 0.68 0.960758
Target:  5'- --aGAGUucuuggaaacaaacGUGAUgGuCGACGGCGGCGa -3'
miRNA:   3'- cuaCUCA--------------CACUAaCuGCUGCUGCCGU- -5'
8509 3' -50.9 NC_002169.1 + 108720 0.69 0.949919
Target:  5'- --gGAaUGUGGc-GGCGGCGGCGGCGa -3'
miRNA:   3'- cuaCUcACACUaaCUGCUGCUGCCGU- -5'
8509 3' -50.9 NC_002169.1 + 124924 0.69 0.945443
Target:  5'- ---cGGUGgGGgcGGCGGCGGCGGCGg -3'
miRNA:   3'- cuacUCACaCUaaCUGCUGCUGCCGU- -5'
8509 3' -50.9 NC_002169.1 + 5726 0.71 0.886528
Target:  5'- cAUGAauaUGUGGU--ACGGCGACGGCAg -3'
miRNA:   3'- cUACUc--ACACUAacUGCUGCUGCCGU- -5'
8509 3' -50.9 NC_002169.1 + 127928 0.71 0.879244
Target:  5'- --aGGGaucgugGUGAUgcgaGGCGGCGGCGGCGg -3'
miRNA:   3'- cuaCUCa-----CACUAa---CUGCUGCUGCCGU- -5'
8509 3' -50.9 NC_002169.1 + 1315 0.78 0.53511
Target:  5'- ---cGGUGUGGUuugagacgaUGACGGCGGCGGCGg -3'
miRNA:   3'- cuacUCACACUA---------ACUGCUGCUGCCGU- -5'
8509 3' -50.9 NC_002169.1 + 93368 1.09 0.008265
Target:  5'- uGAUGAGUGUGAUUGACGACGACGGCAu -3'
miRNA:   3'- -CUACUCACACUAACUGCUGCUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.